Yseq024401.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000870.1:692756-722922[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.028 2.7 9.8 0.8 1 23 335 357 335 357 0.97 2 12 0.00025 0.024 16.2 1.9 2 23 365 386 364 386 0.97 3 12 0.00043 0.041 15.5 1.9 1 23 417 440 417 440 0.97 4 12 0.19 18 7.1 1.7 1 23 444 467 444 467 0.85 5 12 0.0026 0.25 13.0 0.1 3 21 481 499 480 504 0.92 6 12 1.1 1e+02 4.8 0.6 2 23 553 575 552 575 0.92 7 12 1.1e-05 0.001 20.6 0.1 3 23 589 609 588 609 0.98 8 12 0.23 22 6.9 2.8 2 21 616 635 615 637 0.94 9 12 0.041 3.9 9.3 0.8 1 22 641 662 641 664 0.86 10 12 0.083 7.9 8.3 0.2 2 23 671 693 670 693 0.89 11 12 0.017 1.6 10.4 2.1 1 23 716 739 716 739 0.92 12 12 0.026 2.5 9.9 2.8 2 23 746 768 745 769 0.92
Sequence Information
- Coding Sequence
- ATGTTCTCTAAACTCTGTTTCCAGTATCCTCCGATTGAATCGCAGCCCGCGACAAAGGTTAAGCTGACAAAAAGGGCAGTGAAGACCATGATCGCAGAACTGTCCAGAACACCGACGGAGACACTGTCTATAAAGCCCTCGTCGGATGCTAATTCTGTAGTTCCAGTTCCTCAAGATGAGGAACTGAAGACAGATTTATCAGGAGAAAGTTCTGTCGTTTACATAAAGGATGCACAAATTAGTGAAATCGAGTGTTGCCGAGTGTGCCTGGGGGTGACCGGGTGCGAGTTGGTACCGATGGCAACACTGAACATGGCGGCCTCGTACCGCGCTGTGACGGGGTTGCCATTCGCTGACGACGACGGATTGCCGCAGACTATGTGCACTGAGTGTGTCGCTCTCTTGGACACCTGCCTCAAGTTCAGGACTGACAGCCAGCGGGGGTACCAGTGCCTGGTGGACATAGTTGAGAAAAATAAGGCCTCATCAGCCTACGAAACCCAAGACACGGTTGCAACAGCCGATATAATACCAGAAACTTTCAGTCCAGAATATTTGGACGACCAGCTGATGGAAGACGACCACTACGAAGCTAGTAACATAAAACCCGAATACGTCTTCAATGCGAACGACAAAACCGAACCGGAGGATATCGAAATTAAGTTTGAAAATGGTAACGACCCACCAAAAATCGTTGTAACAACCTTAAAACAGCTAAACTGCGAGGAGATTTCAAACATGAAGTCTCTTATTGTGGACCACGACTATATTAAGCAAGAAAAATCTCCACTAGACCAGAAAACGGTGGCGAGAAAACCGAAAAGAAAATTTAAATATAAACCGACTAAGGGAGAACAGCCTAAAAGGGCTCTTAAAACTTTCAGACATAGAGAGCATGACAGTTATATCAAAGAGTATTTCGAAATAACGAGGTTGAATTTGGAAGAGCAAAAAGAGGCCTGGTTTAAAAGAAGTCTAACCAGTAATTACCAAGATTCCCCGTTCAAATGTGATTATTGTTTCAAAGGGTTTTTGGTGGAGGAAACGTTCAAAGCTCATATGGTCAGCCACACAGAGAAAAGCGGGCCGGTCGTCTGCCCGGTATGTAAGAAGCGGTTCGCCACAAAAATAAAACTACTGCACCATAATAAAACTCACAACGAGCACTATGATTGTAAGATGTGCAACTTTAATTGTGGCAGCAGGCATATAGCGAAGGAGCACACGAACTGGCATAAGGGCGTAGTGTACGAGTGTGACCAGTGTGACATGAGCTTTACTAAGAAGACGTCAAGGATGACGCACATTAGACTGAAGCACCCGTCAGACCACGTGTGCAATCTGTGTGGCTACTCGTTCATAGGTTCGAAAGGGCTGCACTTCCACCGGATCATAAGGCACAAGGACGATGACAGACAGCCGACAGAGCAGAGTCCCTCCTGCGCAGAGTGCGACATAGTGTTCGTATCGCAAGAAGCTCTTCAGACTCATCTCTCTGTATCGTTGCGACACACTGACCATGTGGAACCTACGAATCAAAATAATCAATCTGGAACCGAAGATAATGTTCAAACTACAACCGTGCCAGCAAGTAGAAAAGAAAACCGATTGATGTACAAGAGATTGTTCCGGAAGAAAAACAGAATCAGAAGCATTAAATGTGAAGAGTGCGGCTTGCCCCTCCCCACTCTGAGCGCGCACCGCACACACTACAAGAACAAACACCCGAACGTTCACAGACCGATCCCCGGCCCGGAGGCGTTGTGCGAGATATGTGGGAAAGCGTTCACGAACCCGGCAAGCCTACAGTATCACAAGGCCACACATTTCAACGAAGCAACACTAAAATGCACAACTTGCAACGAGTTGTTTGACAGCAAGGAAGCCATAACGCGGCACAGGCGGTGTCACACCGATCTGTACTTGTGTCACATCTGCGGCAAAGAATACCGAGCGCGGAGTAGCAGAGACAGACATGTCACTGATGTACACAAAGTGGCGGTTGACGTAAAGTGCTACTTCTGCGAGAAGACCTACAAAAGCTACGGGCTTATGGAAGCGCATGCGACCGAAGAGCACCCGAACCGACCGTGGCCGAAGAAGCACGACCGGCGCCGAAGAACCGCCGAGGCCGAACTAGAGCGGTTCTTCTGTGACATCTGTAAGAGAGAGTTCAAGCAGAGACGGAACAGGGACAGGCATGAGAAGGATGTCCACAAGGAAGTGAATGACGTGCAGTGCACGATCTGCGACAAATACTTCAAGAGTGTCGCCAGTATGAAGCTCCACACAACGCACGTGCACCACAAGAAGCCCTGGCCGAACAGGAATACGGTAACGAAACGCGCACCCAAGTACGACCGCCCGCAGTATATAGAGATAACTAAACGCAGGAAGATGAGTGAAACAGCCGAGAGATTGGAGCACGAGTGGGAGCAGCACATGGAGGCCAGTGCTGCCGTCGAGAGTCTCAACACTTGTGGCTAA
- Protein Sequence
- MFSKLCFQYPPIESQPATKVKLTKRAVKTMIAELSRTPTETLSIKPSSDANSVVPVPQDEELKTDLSGESSVVYIKDAQISEIECCRVCLGVTGCELVPMATLNMAASYRAVTGLPFADDDGLPQTMCTECVALLDTCLKFRTDSQRGYQCLVDIVEKNKASSAYETQDTVATADIIPETFSPEYLDDQLMEDDHYEASNIKPEYVFNANDKTEPEDIEIKFENGNDPPKIVVTTLKQLNCEEISNMKSLIVDHDYIKQEKSPLDQKTVARKPKRKFKYKPTKGEQPKRALKTFRHREHDSYIKEYFEITRLNLEEQKEAWFKRSLTSNYQDSPFKCDYCFKGFLVEETFKAHMVSHTEKSGPVVCPVCKKRFATKIKLLHHNKTHNEHYDCKMCNFNCGSRHIAKEHTNWHKGVVYECDQCDMSFTKKTSRMTHIRLKHPSDHVCNLCGYSFIGSKGLHFHRIIRHKDDDRQPTEQSPSCAECDIVFVSQEALQTHLSVSLRHTDHVEPTNQNNQSGTEDNVQTTTVPASRKENRLMYKRLFRKKNRIRSIKCEECGLPLPTLSAHRTHYKNKHPNVHRPIPGPEALCEICGKAFTNPASLQYHKATHFNEATLKCTTCNELFDSKEAITRHRRCHTDLYLCHICGKEYRARSSRDRHVTDVHKVAVDVKCYFCEKTYKSYGLMEAHATEEHPNRPWPKKHDRRRRTAEAELERFFCDICKREFKQRRNRDRHEKDVHKEVNDVQCTICDKYFKSVASMKLHTTHVHHKKPWPNRNTVTKRAPKYDRPQYIEITKRRKMSETAERLEHEWEQHMEASAAVESLNTCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -