Basic Information

Insect: Ypsolopha sequella
Gene Symbol: -
Assembly: GCA_934041175.1
Location: CAKOGU010001902.1:16658-19214[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00027 0.025 16.1 0.7 1 23 172 195 172 195 0.96

2 14 6.1 5.8e+02 2.4 2.4 1 9 216 224 216 237 0.76

3 14 1 97 4.9 0.3 2 23 247 269 246 269 0.92

4 14 2 1.9e+02 3.9 3.0 1 23 275 298 275 298 0.95

5 14 0.015 1.4 10.6 0.8 1 21 302 322 302 323 0.94

6 14 8.7e-05 0.0082 17.7 1.3 1 23 331 353 331 353 0.97

7 14 0.00047 0.044 15.4 0.5 1 23 357 379 357 379 0.97

8 14 0.00049 0.046 15.3 0.2 1 23 391 413 391 413 0.98

9 14 0.096 9.1 8.1 0.3 3 22 421 440 420 444 0.92

10 14 0.15 14 7.5 1.6 1 23 454 477 454 477 0.96

11 14 0.0004 0.038 15.6 5.6 1 23 483 505 483 505 0.99

12 14 0.0008 0.076 14.6 3.8 1 23 511 533 511 533 0.96

13 14 0.89 84 5.1 0.2 1 23 539 562 539 562 0.81

14 14 0.35 33 6.3 1.5 2 23 568 590 567 590 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00027	0.025	16.1	0.7	1	23	172	195	172	195	0.96
2	14	6.1	5.8e+02	2.4	2.4	1	9	216	224	216	237	0.76
3	14	1	97	4.9	0.3	2	23	247	269	246	269	0.92
4	14	2	1.9e+02	3.9	3.0	1	23	275	298	275	298	0.95
5	14	0.015	1.4	10.6	0.8	1	21	302	322	302	323	0.94
6	14	8.7e-05	0.0082	17.7	1.3	1	23	331	353	331	353	0.97
7	14	0.00047	0.044	15.4	0.5	1	23	357	379	357	379	0.97
8	14	0.00049	0.046	15.3	0.2	1	23	391	413	391	413	0.98
9	14	0.096	9.1	8.1	0.3	3	22	421	440	420	444	0.92
10	14	0.15	14	7.5	1.6	1	23	454	477	454	477	0.96
11	14	0.0004	0.038	15.6	5.6	1	23	483	505	483	505	0.99
12	14	0.0008	0.076	14.6	3.8	1	23	511	533	511	533	0.96
13	14	0.89	84	5.1	0.2	1	23	539	562	539	562	0.81
14	14	0.35	33	6.3	1.5	2	23	568	590	567	590	0.95

Sequence Information

Coding Sequence: ATGCATAACATCCCAAAAACGCAGGAACAACTTGTACAATACTCAAAACTCAAATTGAGGTTAAGAAATATTTTTCACAGCACAAAATATTGCGCTGTTTGTTTGGATACCGAGAATTTAAGAAATACACTTGAAAATATCGTTATAACCAACTGGGAGGGCAATTATGCGACAACGATGCAATTTATCTTGAAGACCGTTTTCGCTGATCAGAAACCGCTAACTATGGACGTATGTGAAGGTTGCAGAGAAAATGCAATAAGTGCTTTTACCTTCATTCAAAACTCAAAGCGCTCTGTAGAAATATTAGAGCACTACATAGAGCAACTAAACTTAAGAATAGATGACATACACAGTACAATTTTGTCAGAAAGAAGTGATGATGATATTGTAGACACGGTTATAGTCCTTGATGATCCAATTTCTGTATCAAGTTGTGAAGACGACGACAAATTAAAGGCATTTGAAGATGAAAACATAGAAATAAAACAAAAGAAAAAGAGAAATGGTCATTTTGTCTGTGAATATTGTAAGAAAGTATTTGTCTCTAAGCAAGGCATGTCATATCATATCAGTAAAATTCACAAGAAATATTTTGCAAGAAAACATTTGCAAAAACGAGAAGTGAAGAAGTATATTAGGAGGTTTGAATGTCCCGATTGTGAAAAAAGTGATTGTGAACACAGGAAATACATGCAACATTATGAGAAACAAAGACAGGCTGGTCAAAAGTTGATTAAATGCATTGACTGTGACTACATTTGCAGTTTGAAACCAACCTTTATCGCACATGTCAACAAAGTTCATCTGAAGACATTCAAGTTTGTTTGTGAAACATGCAGCAAGCCATTGCACTCTAAATTAGCATACAAGATGCACAAAAAAAACTTTCACACTGAATACCACAATTGTCAGTATTGCGAACGACCATTTCAATTTGTGAATAACTTGGAAGCTCACCAAAAGCAGTGTAAAGATTTTATTAGACAGTTTATATGTCACACATGCCCAGCTTCTTTTGATTCAAGAGTGAAGTTAAATCGCCACATGGGAAGGCATGTTGAAAAGTTTCCTTGCAATCTTTGCAACAAGGTCCTTATGTCTGCAAAGAATTTAAAAACCCACAAAGAAATGCACAGGTCAAATAAAAGAATGAAAATGCAGTACAATTACCGCTGTGCTATATGCAACGAGAGCTTCACAAGTGCTACAGAACGTGATGCACATTTAAACAAGCACAGCTTGAATGAAAAGCCTGCATGTTTAAGTTGCAATATTTATTTTGAAACTCCTCAAGACTATAATAAACATATCCAGACAAGTAGCCAACATGTGCAAAACAAGGGGCAACGTACCACATACCATTGCAATTACTGTAACTATTCAACATTGGCAGAGTTTAATTTAGAAGCACACATAAATCGCTATCACTTGAAAATTGCAccatacaaatgtgacacatgtgaaaagaaatttacaaataaggttaaactaacttgtcatatgaatacgcacacgggattgaagacacatcattgtgctgtatgtgacaatagcttctgtggttccgccgcactacaaaagcacatgagacttcacacgggtgagagaccatatctttgtgaaatgtgtggtgaaggattcaTATCGACAACTGTTAAGAACATGCACGTTTTGAAGAGGCATTCCGAGAAGACGGTGACCTGTCCACTGTGTCACAGCATGTTCTTCACTCTACCCTTGATGAGGAGTCACTTTAAAAGGGTCCACTGGAAGGAAAAAGGGGTGAAGTTCGATGTAACCAAAGTAGCGGGACTAAAAGAAGAGCACTATGATCTTTTTAGAGACCGGAGATTACTCACTTTGGACAGTAAGTAA
Protein Sequence: MHNIPKTQEQLVQYSKLKLRLRNIFHSTKYCAVCLDTENLRNTLENIVITNWEGNYATTMQFILKTVFADQKPLTMDVCEGCRENAISAFTFIQNSKRSVEILEHYIEQLNLRIDDIHSTILSERSDDDIVDTVIVLDDPISVSSCEDDDKLKAFEDENIEIKQKKKRNGHFVCEYCKKVFVSKQGMSYHISKIHKKYFARKHLQKREVKKYIRRFECPDCEKSDCEHRKYMQHYEKQRQAGQKLIKCIDCDYICSLKPTFIAHVNKVHLKTFKFVCETCSKPLHSKLAYKMHKKNFHTEYHNCQYCERPFQFVNNLEAHQKQCKDFIRQFICHTCPASFDSRVKLNRHMGRHVEKFPCNLCNKVLMSAKNLKTHKEMHRSNKRMKMQYNYRCAICNESFTSATERDAHLNKHSLNEKPACLSCNIYFETPQDYNKHIQTSSQHVQNKGQRTTYHCNYCNYSTLAEFNLEAHINRYHLKIAPYKCDTCEKKFTNKVKLTCHMNTHTGLKTHHCAVCDNSFCGSAALQKHMRLHTGERPYLCEMCGEGFISTTVKNMHVLKRHSEKTVTCPLCHSMFFTLPLMRSHFKRVHWKEKGVKFDVTKVAGLKEEHYDLFRDRRLLTLDSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -