Yseq003625.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000102.1:1422838-1426987[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.019 1.8 10.3 0.7 3 23 192 213 192 213 0.97 2 12 0.0092 0.87 11.3 0.0 1 23 219 241 219 241 0.97 3 12 0.012 1.1 11.0 0.4 3 19 273 289 271 292 0.93 4 12 0.015 1.4 10.6 0.4 2 23 339 361 338 361 0.94 5 12 1.7 1.6e+02 4.1 4.1 2 23 396 417 395 417 0.86 6 12 2.1 2e+02 3.9 0.0 3 20 425 442 424 444 0.93 7 12 0.0019 0.18 13.5 1.5 2 23 467 488 466 488 0.96 8 12 0.00038 0.036 15.6 5.2 1 23 495 517 495 517 0.95 9 12 0.00053 0.051 15.2 0.3 3 23 525 545 524 545 0.97 10 12 0.0004 0.038 15.6 0.8 1 23 551 573 551 573 0.98 11 12 0.00037 0.035 15.7 5.4 1 23 579 601 579 601 0.94 12 12 3.2e-05 0.0031 19.0 2.8 1 23 607 630 607 630 0.98
Sequence Information
- Coding Sequence
- ATGAGTACTTTGAAACGGCAATACTGTCGTTTCTGTGCCGAACAGAAGATGGAGAACGAATTATTTGACCTTCTTGTCCTCCCTGATTTAAGCCAAGCAATTGAAGAAAAGCTATCATTTTTCAATGTCGGGCTAGGTATAGACCTGTCGTCAGCAAACAGCTTGCCTAAAACTGTCTGCTTTTCGTGCCACGCTTCATTGGACAACGCTCATGGGTTCCTATTGAGAGTCAGGAGGTCTCAAGCCGTGCTCAGGCAGGTATACAAAGATAAGCTCACTGAAACAGGCGAAGCTGTTATAGGTCAAGTGTACGCGGGCTTAACAGTAGAAGTTAAGGCTGAAACACCACTCAAAGATGAACCCGACTACAAAATCTCAGAATCAGATATTGAATTGGACCCATTTTTAGATAAAGGTTTATCAGAAACCAGCAGCATTATAGACAGAGAGTACAAGTCAGAAGATGTACTCACATATATGGGAGTGCCTATATTTGAGCAGGACGTCTCACTGAATGTGGTAGCTGGAAATAGGAGCGAGGAAGATGTTTCATGGACTTCATATATGTGGGGTTGTCAATTCTGTGATCAGAGCTTTGTAGATATGAATCTGTTGCGGGAACACAGCAAGAAGGCTCATGACCTGTGTTGTGCCTTCAAATGTGCTGATTGCGGGGAGCCATTTGGGAATTTTGAAGTTTTTGTTGAACATGCAAGGGTACACAGAGTCTCACTCAAGTCGTACTGCCCATACTGCAATCTGAAACCTTTGCTTCTAATAAAACACATGAAAGGACATAAAAATAAAGATAGCATTTGCGAGCGATGCGGAAAGATATTTGGCAACAAACACTACCTTGCAGACCATAACACCAAGTACAAGCCATTGAAAAGAAAACTAAACAGCATTGGAAAACCAACAAAAGTGAAAAAGAAAAAACGATCAAATCCATGCGTGCTGCCAGCCTCCAGGATTGAAACGATTGAGAATAAATCATGGAGTGGGTATCCCTGGTCGTGTCAGATGTGTAAAAATGAATTTAATGATTTGTTCTTACTCAGAACACATATCAAAGATGTCCATGGCAAATGTTTTGCGATGAAGTGTGTTGATTGTGATGATATCATGGAGTGTTACAGAGGGTTTGCGTACCATGTGAGAAGACATCGACCCTTTCTAAAACAGTACTGCCACTACTGCAACTACAAGTTCAAAGAACACGAACAAGACACCGACCACATCTCCCAACACTTCGTCAACCCAGACCGACTGTGTGAAGGCTGCGGAGAGATCCTCCCCGATACAGAGACCTATCATCAACACATAACATCATACGACCCACCCAAACCTAAGCGACAACCATTCAGAAGAGAGAAACCTGTTGGCATCGAAGACTTGACATGCAACATCTGCCACATGGTTCTGAAAAGTCAAAACAGCCTCCGGACCCACAAAATAGTTCACACAGTAAGGAACAAAGATTTCACATGCGACCGGTGCGGAAAAGCCTTCTACAGTAAAACGCACCTCCAAGCCCATTGCTTGACCCACGAAGAATTCGCACCAGAAATATGTAAAGTGTGCAACAGAGGCTTTAAAACTGTGCCATTACTAAAACAGCATGTCTTAACGCATACAGGAGTGAAGCCCTTCGAGTGTGAAGTATGTCAAAGAAGGTTCCGAATCAAGAAGCAACTGGTAGAACATTCGCGAATACACACGAACGAAATGCCTTTCAAATGCCAATTTTGTGATAAAGCTTTTAAACACAAGAGTAACGTCAGAACACATGAGTTTCAACATACCGGGGCGAGGCCGTACCAGTGTACTGAATGTGGAATGGATTTTACGAACTGGGCGAATTGCAACAAGCATATGAAGAGAAGACACGGGATAACTCTGGCTAAAACCATGAGGACATCCCGGGGCAAGCTGCCTATAGACGTTAAAACTGAACACTTGGATGCGGTCAAAGAATGGACGGAAAAAATATTGGTCCCTTTAAAGAGAGGAAAGAAGACTAAGAAAATCATTGAAAATGATGATTGA
- Protein Sequence
- MSTLKRQYCRFCAEQKMENELFDLLVLPDLSQAIEEKLSFFNVGLGIDLSSANSLPKTVCFSCHASLDNAHGFLLRVRRSQAVLRQVYKDKLTETGEAVIGQVYAGLTVEVKAETPLKDEPDYKISESDIELDPFLDKGLSETSSIIDREYKSEDVLTYMGVPIFEQDVSLNVVAGNRSEEDVSWTSYMWGCQFCDQSFVDMNLLREHSKKAHDLCCAFKCADCGEPFGNFEVFVEHARVHRVSLKSYCPYCNLKPLLLIKHMKGHKNKDSICERCGKIFGNKHYLADHNTKYKPLKRKLNSIGKPTKVKKKKRSNPCVLPASRIETIENKSWSGYPWSCQMCKNEFNDLFLLRTHIKDVHGKCFAMKCVDCDDIMECYRGFAYHVRRHRPFLKQYCHYCNYKFKEHEQDTDHISQHFVNPDRLCEGCGEILPDTETYHQHITSYDPPKPKRQPFRREKPVGIEDLTCNICHMVLKSQNSLRTHKIVHTVRNKDFTCDRCGKAFYSKTHLQAHCLTHEEFAPEICKVCNRGFKTVPLLKQHVLTHTGVKPFECEVCQRRFRIKKQLVEHSRIHTNEMPFKCQFCDKAFKHKSNVRTHEFQHTGARPYQCTECGMDFTNWANCNKHMKRRHGITLAKTMRTSRGKLPIDVKTEHLDAVKEWTEKILVPLKRGKKTKKIIENDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -