Basic Information

Insect: Ypsolopha sequella
Gene Symbol: Sall1
Assembly: GCA_934041175.1
Location: CAKOGU010002599.1:22352-23926[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0066 0.62 11.8 2.1 2 23 71 93 70 93 0.93

2 13 2.2 2.1e+02 3.8 0.4 2 23 138 162 137 162 0.92

3 13 0.017 1.6 10.5 1.7 1 23 168 191 168 191 0.97

4 13 0.021 2 10.1 0.5 1 20 195 214 195 216 0.92

5 13 1.4 1.3e+02 4.4 1.3 1 23 224 246 224 246 0.86

6 13 0.00033 0.031 15.9 0.8 1 23 252 275 252 275 0.96

7 13 0.015 1.4 10.6 6.5 1 23 289 311 289 311 0.97

8 13 0.014 1.4 10.7 2.9 1 23 317 341 317 341 0.93

9 13 0.00058 0.055 15.1 1.9 1 23 353 376 353 376 0.97

10 13 0.0059 0.56 11.9 0.6 1 23 382 404 382 404 0.97

11 13 0.0004 0.038 15.6 0.8 1 23 413 435 413 435 0.98

12 13 0.00092 0.088 14.4 1.8 1 23 441 464 441 464 0.96

13 13 0.00017 0.016 16.8 2.0 1 23 469 492 469 492 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0066	0.62	11.8	2.1	2	23	71	93	70	93	0.93
2	13	2.2	2.1e+02	3.8	0.4	2	23	138	162	137	162	0.92
3	13	0.017	1.6	10.5	1.7	1	23	168	191	168	191	0.97
4	13	0.021	2	10.1	0.5	1	20	195	214	195	216	0.92
5	13	1.4	1.3e+02	4.4	1.3	1	23	224	246	224	246	0.86
6	13	0.00033	0.031	15.9	0.8	1	23	252	275	252	275	0.96
7	13	0.015	1.4	10.6	6.5	1	23	289	311	289	311	0.97
8	13	0.014	1.4	10.7	2.9	1	23	317	341	317	341	0.93
9	13	0.00058	0.055	15.1	1.9	1	23	353	376	353	376	0.97
10	13	0.0059	0.56	11.9	0.6	1	23	382	404	382	404	0.97
11	13	0.0004	0.038	15.6	0.8	1	23	413	435	413	435	0.98
12	13	0.00092	0.088	14.4	1.8	1	23	441	464	441	464	0.96
13	13	0.00017	0.016	16.8	2.0	1	23	469	492	469	492	0.97

Sequence Information

Coding Sequence: ATGCAACAGCTACATAGCCATATCGATGATACAAATGCATTAGTGGAGACATCAGAAGTCAAACAGTACGATCACACAGTGTTTTCTTTGAACGATCCTGTAAATGTCTACGATGTTAAGGAAGACCTTCCTCTTGTAAAAGAAGATGAGTACTCTGTTAAAGCAGAAGTGTTGGACGGCATTTCAGAAACATCAACCAGTAACAAGCTATATTGTGACTATTGCATGAAACCGTTTAGCTCAAAGAAAGGACTGACCTACCACATTCATCAGACCCACATAAGTTTTGAAAGTCCAGGAAGCCATGTAAGAAGTAAATTTGAATGCACAGAGTGTGTAGAGACCAAATGCAAACATCTGAAGTATTTGCAAGCACTCAAGGAGCAACGACTTGCTGGTCTTAAAACCGTAACATGTCCTGATATAGATTGTAGTTACACTTGCTATTGGAGATCGGACCTTATAATGCATGCAAATAACAAGCATTTAAAAATCTTTACCTTTACATGTGAGTTCTGTGGGAAACCGCTGCAATCAACAAAACAATACAATTACCATATATTGAAGTTTCATACAGACCTTCATATCTGTGTATATTGTGACCGCCAGTTCAAAGTGGAAAACAATATGATAAAGCACAGCAAGGAGTGTCAATCTTCTAAAAGACCTTATGAATGTCAAGAATGTCCTGCTTCATTTCTGACAATGAAGAAACTCCGGTTCCATAAGATGAAACATGAAACACGATTTCATTTCCCTTGCAATTTATGTAGTAGAGTATTTAGAACCCAAACTGTCTTAGAGCAACACAAAGATACAACGCATAACATTAACCGTGAACCGACCAACAACAGTGTCTCCGAATTTTGCTGTTTCATTTGCCATGAGAAGTTCATCACACAGAAAGAAAGAAATAATCACATGAACAACCATGGTCCTAATGAAAAATATAAATGTTTAACTTGTAATACAGAATATAGTACTCTAATAGAGTACAGACATCACCGAAGAAGTTATGCGCATTTAACGAAAATACACCCTGGGAAACGTCAAAAATACCAATGTAAGGATTGCCAGTACTCCACGATCACAACTCATCTTTTAGAAGCCCATGTGAACCGATATCACATGAGAGTGGTGCCATACGCATGTCAGCAGTGCCCACGTAAATTCTTGAATGCACAAAAGTTAGAACAGCATTTACTGAAACACAAATCAGAAATGGAACCAAAAAAGTTTGTTTGTGAAATGTGTGGCAATCATTTTCGTAGCGCTATCGCTTTGCAGCTCCATAATAGAAGACATACAGGAGAAAAGCCATACAAATGTGAGTTTTGTGATAAAAGATTTGTTAGTGCTAGCACAAGAAGCGTTCATAAACTGAAGTCACATTCTGAGAAGAACTTTAAGTGCCCAATATGTGACCACAAGACTCACACCCTGGCCAACTTGAGAGCGCATATCTCGAAAGTTCACTGGAAAAAGAAAGGAGAGAAGTTTGATATCAGGAAGTTGGAGGGCATCAGAGAAGAAGATTACGAACTTTTTAGAGATCGAAGATTCCTTCATTTGTAA
Protein Sequence: MQQLHSHIDDTNALVETSEVKQYDHTVFSLNDPVNVYDVKEDLPLVKEDEYSVKAEVLDGISETSTSNKLYCDYCMKPFSSKKGLTYHIHQTHISFESPGSHVRSKFECTECVETKCKHLKYLQALKEQRLAGLKTVTCPDIDCSYTCYWRSDLIMHANNKHLKIFTFTCEFCGKPLQSTKQYNYHILKFHTDLHICVYCDRQFKVENNMIKHSKECQSSKRPYECQECPASFLTMKKLRFHKMKHETRFHFPCNLCSRVFRTQTVLEQHKDTTHNINREPTNNSVSEFCCFICHEKFITQKERNNHMNNHGPNEKYKCLTCNTEYSTLIEYRHHRRSYAHLTKIHPGKRQKYQCKDCQYSTITTHLLEAHVNRYHMRVVPYACQQCPRKFLNAQKLEQHLLKHKSEMEPKKFVCEMCGNHFRSAIALQLHNRRHTGEKPYKCEFCDKRFVSASTRSVHKLKSHSEKNFKCPICDHKTHTLANLRAHISKVHWKKKGEKFDIRKLEGIREEDYELFRDRRFLHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01548278;
90% Identity: iTF_01548278;
80% Identity: iTF_01548255;