Yseq009988.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000293.1:62550-66540[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.36 34 6.3 0.2 1 23 3 26 3 26 0.94 2 15 0.078 7.4 8.4 0.4 1 13 33 45 33 48 0.90 3 15 0.0071 0.68 11.6 3.1 1 23 60 82 60 82 0.95 4 15 0.00071 0.068 14.8 1.2 1 23 88 110 88 110 0.96 5 15 0.045 4.3 9.1 0.1 2 20 148 166 147 167 0.94 6 15 0.024 2.3 10.0 0.2 2 23 229 251 229 251 0.90 7 15 0.64 61 5.5 2.1 2 23 274 296 273 296 0.94 8 15 0.0055 0.52 12.0 1.4 1 23 318 340 318 340 0.94 9 15 0.00067 0.063 14.9 0.1 1 21 344 364 344 367 0.89 10 15 1.7 1.6e+02 4.1 1.5 1 21 373 393 373 394 0.91 11 15 0.014 1.3 10.7 0.4 1 23 401 424 401 424 0.92 12 15 0.071 6.8 8.5 1.3 1 16 431 446 431 454 0.82 13 15 0.0096 0.91 11.2 2.6 1 23 458 480 458 480 0.93 14 15 0.00015 0.014 17.0 1.0 1 23 486 508 486 508 0.97 15 15 1.8 1.7e+02 4.1 6.5 1 23 514 536 514 537 0.93
Sequence Information
- Coding Sequence
- ATGCCTTTCCGGTGTATCTATTGCGAAGAACGTTACATATTCTGGGAAGCCAAAGAGCGACATATGCTCGAAATGCATGGGCATTCAAAGAAGACATATCCCTGCACAGAATGCGATAAAATCTTTGAAACTAGGACGGTGTATTACTTTCATGATAAGGCGTCGCATACAAATGACTTCCAGTGTCAATATTGCAAACAAGGTTTCGGGTCCCGTGGGCATCTCCTAGATCATTCATTTAAACATACTGGAGAAAGACCACACAAATGCAGTCAGTGCGGCAAGGGTTTCACAACCGTTAGGATCTTGAGAAAGCATATTGTTATACACGATGATAGCGAAGATGAAGAGACAACGTTGGACGCTACAAGGGCCAACTCCATGATTATATTAAAGCATTCCACGGCATACCCGTTCACACTGACTGGACGTAACTTGGTGAAATGCTCGTTTTGCGCTAAAGCTTTTGAAGATCCTATTGATTTTCGAAACCATGTTGATTGTCAACATAAAGATGTAGATAGATCTGCCGCGTTATCTAGGAAAAGAGTAATTCGAATTGATGTAACTGATCTCCGATGCGGAGATGAAGAAACCGCACTGGATGCTGCAAAGGCTAACTCTGTTATTATATTAAAACACTCAACGGCGTACCCTTTCTCTCTGGCTGATCAAAAGTGGGCCAAATGCTCATTTTGTGTCAAAGCATTTGAAGATCCATTGGATTTCAGAAAACACGTTGATGCCGGCCACAAATATGTCGATAGATCTACAGCGTTATCAGGAAAAGATATTATTCGAATTGATATCACTGATTTGCGATGCAAACAATGCATGGAGTTATTTGATACACTAGAGGCGTTATCGAAACATTTAAAACATAAACACGAGCTCGAGATTGACACAAATTCAAGATTGCTACTTGTTCCCATGAAACTAGTGATCGATCGCTTTGATTGTGTAATGTGCAAAAAGAAATTTACAGGATTACGTGAGTTATTCAAACATTCTGGAACTCATTTTCAAAGATTTATTTGCGACGTATGTGGTAAAAATTTCGAGACTCCTAGAGGACTGCAGGGTCACACTGTTGCTAACCATTCCAAAGATGGTACATTTTACTGTAGATATTGTAAAACAAATTTCCTCACTAAGGAGGCTAAAAAGACGCATGTTCGAGAGAATAAAGCATGCATGCCTTTTGTGTGCGTCCATTGCTCGGAACGATTCATATTTTGGGAAGCGAAAGAGCGGCATATGGTCGAAATGCATGGACATGCAATGAAGACGTATCCCTGCACAGAATGCGACAAAATCTTTGAATCAAGAACTTTGTATTACTTTCATTTCAAGGCTACGCATACAAGCGACCACAAATGTCAATATTGCGAACAAACATTCCCGACCCGTCGCGATGTTCGCGACCATGCCTTCCAACACACCGGAGAAAGACCTTACAAATGCAGCTATTGCGCCAAGGGTTTCACAACAGATAAAAGCCTCAGGCAGCATGAGCTCATCCACGATGACAGTAAAAAGCATTGTTGCCCAGTCTGTAGCAGACTATTCCCAAAAATGGCGAGATTTAAAGATCATTTGAAGCGTCACCACCCGTCAACGTTTGAAGAAATGTTTGGCGAGACTTGA
- Protein Sequence
- MPFRCIYCEERYIFWEAKERHMLEMHGHSKKTYPCTECDKIFETRTVYYFHDKASHTNDFQCQYCKQGFGSRGHLLDHSFKHTGERPHKCSQCGKGFTTVRILRKHIVIHDDSEDEETTLDATRANSMIILKHSTAYPFTLTGRNLVKCSFCAKAFEDPIDFRNHVDCQHKDVDRSAALSRKRVIRIDVTDLRCGDEETALDAAKANSVIILKHSTAYPFSLADQKWAKCSFCVKAFEDPLDFRKHVDAGHKYVDRSTALSGKDIIRIDITDLRCKQCMELFDTLEALSKHLKHKHELEIDTNSRLLLVPMKLVIDRFDCVMCKKKFTGLRELFKHSGTHFQRFICDVCGKNFETPRGLQGHTVANHSKDGTFYCRYCKTNFLTKEAKKTHVRENKACMPFVCVHCSERFIFWEAKERHMVEMHGHAMKTYPCTECDKIFESRTLYYFHFKATHTSDHKCQYCEQTFPTRRDVRDHAFQHTGERPYKCSYCAKGFTTDKSLRQHELIHDDSKKHCCPVCSRLFPKMARFKDHLKRHHPSTFEEMFGET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -