Yseq003612.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000102.1:1308617-1311739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.14 13 7.6 0.2 2 23 169 191 168 191 0.93 2 13 0.098 9.3 8.1 0.3 1 23 197 219 197 219 0.95 3 13 2.3 2.1e+02 3.8 2.1 2 23 226 247 225 247 0.95 4 13 0.86 82 5.1 0.1 3 20 254 271 253 273 0.90 5 13 1.5 1.4e+02 4.3 0.3 5 23 310 329 309 329 0.91 6 13 1.6 1.5e+02 4.3 0.1 2 23 336 357 335 357 0.94 7 13 0.029 2.8 9.7 0.0 3 21 392 410 391 411 0.93 8 13 0.00036 0.034 15.7 0.8 2 23 435 456 434 456 0.95 9 13 5.7e-05 0.0054 18.3 0.2 1 23 463 485 463 485 0.96 10 13 0.0022 0.21 13.3 1.7 3 23 493 513 491 513 0.97 11 13 6.4e-05 0.0061 18.1 2.0 1 23 519 541 519 541 0.98 12 13 0.00031 0.03 15.9 2.2 1 23 547 569 547 569 0.98 13 13 0.0005 0.047 15.3 3.6 1 23 575 598 575 598 0.98
Sequence Information
- Coding Sequence
- ATGGATGCATATAAATATATATATTGCCGTTTCTGCGCAGAAAGGAAGCCGGGAGATTCTATTCTAGATCTAACATTGGACGATAATTTGTTCGATCAAATTGTTGAAAAATTGTCCAATATAAATTTTAATTACGTGGATTTATCATCAGGAAACTCGTTACCGAAGACTATCTGTCCATCTTGCTACGAATCCTTAACGACCTCTTACGATTTCCTTTCAAAAACCAAAGAGGCGCAGTGTTACCTAAATGATCTGGTTTTGAAGAAAAACAACATCAAATTGGAGAAACTCATTAACTCTGCTCCTCAAACTAAGGAGCGTCAACTTAGCATCAAACTAGAGGCACATAATGAACATGAGAAAGTGAATAAACCAGAAATTTTGAGTGATTCAGATAGTTTTAGTTTTGAGGAATGTGTTGATGATCTGATAATATACCCATTACAAGATGATACCTTTTCGGAGCACAGTGTAGATAGATCCTGGTTGGGGTACCCGTGGGTCTGTGTCCATTGCAATGCAATATTTAAGGATATAAAGCCTCTGAGAGACCATGCTAAGCAGCTTCACAGTACATGCTATGCATTCAAGTGTGTAGATTGTGATGAAGAGATGTTCAATTTTGAGGACTTTGTTGAACATGTGAGGACGCACCGAGAGTTTCTTGGAATCTACTGCCAGTACTGCAACATGAAGCTAGAGAGCTACGCACACACTAAACTTCACACAGAGAAGCACATCGACAACCAAAACATCTGTAGCATGTGTGGAGAACTGTTCCCAACCAACATGCTACGTCGACAACACCGAGCTAAATACAAGCCCAAATGTAAAAAACTCAAACTAAAGAAGAAAATAGAGAGTTTAAAAGTTTACGAATGTGACATTGAAGACAAATCGTGGACGGGTTACAGCTGGGGCTGTCAGTGTGGAGAGAAGTATCCTGACGTACATGCTCTTAGGTCACACTCTAAAGAGGCTCATGGTAAATGTTATGCAATGCAGTGTACGGACTGCCCTGAGGGTATGGACAGTTTTAGAGGGTTCGTGGAGCATGTGAGGAAGCACAGGCCCTATCTGAAAGAGTACTGCCAGTACTGCAACTACAAATACGATGCAAAAGATGAAACTGACCACATCTACCAGCACTTCTCCGGTGACCAGAAGATTTGTGAGGGCTGCGGCCAGATACTACCCGACCGGTTCCAACTAAACACGCACATCGCCACGTACAATCCACCCACACCGAAGCGAATACCCTTTAAAAAGAGAGAGCGACCAATCACAGTGGACGACCTGACCTGCCCGATCTGCAACAAACTGACCAAAAGCCTCAGCAACTTAAAGTCGCACAAGCTTCTTCATACGGAGAGAAATCGCAATTTCACTTGTGACCAGTGCGGCAGAGCATTCTACACCAACGGAGCATTGTCAGCTCACAAGATACTCCACGAAAACCCTGAGCCGCAGATCTGTAAGATATGTAAGAAGAGCTTCCTCACAATATCGAGGCTAAAGAAGCACGTTCAAACGCACACCGGGGAGAAACCGTACCAATGTGAAGAGTGCAAGAGAAGTTTCCGACTGAAAGAACAGTTAAGGTACCATTCGATAACGCACACGAACGAAATGCCGTACCAGTGCGAGTTTTGCAACAAAGCGTTTAGATTCAAAAACGTATTGAAAACGCACGTGAATCAGCATACGGGAGCGAGGCCGTACCAGTGTACGCAATGCGAGATGGACTTCGCTAATTGGTCAAATTGCAACAAGCACATGAAACGCAAGCACGGAATGACGTTGGCTAAGAACATGTTGACGTCGTTCGGGAAGTTGCCGTTGAATCCGTTGACAGGGTTGCCGAAGCCTTTGAACAACGGATCGATGGTCCGCGAGTGGACGGAAGAGATCATGGGGCCAAGGAAGAGGGGGAAGAAGACGGATGGAGCGGGGACGTCCGCGTGA
- Protein Sequence
- MDAYKYIYCRFCAERKPGDSILDLTLDDNLFDQIVEKLSNINFNYVDLSSGNSLPKTICPSCYESLTTSYDFLSKTKEAQCYLNDLVLKKNNIKLEKLINSAPQTKERQLSIKLEAHNEHEKVNKPEILSDSDSFSFEECVDDLIIYPLQDDTFSEHSVDRSWLGYPWVCVHCNAIFKDIKPLRDHAKQLHSTCYAFKCVDCDEEMFNFEDFVEHVRTHREFLGIYCQYCNMKLESYAHTKLHTEKHIDNQNICSMCGELFPTNMLRRQHRAKYKPKCKKLKLKKKIESLKVYECDIEDKSWTGYSWGCQCGEKYPDVHALRSHSKEAHGKCYAMQCTDCPEGMDSFRGFVEHVRKHRPYLKEYCQYCNYKYDAKDETDHIYQHFSGDQKICEGCGQILPDRFQLNTHIATYNPPTPKRIPFKKRERPITVDDLTCPICNKLTKSLSNLKSHKLLHTERNRNFTCDQCGRAFYTNGALSAHKILHENPEPQICKICKKSFLTISRLKKHVQTHTGEKPYQCEECKRSFRLKEQLRYHSITHTNEMPYQCEFCNKAFRFKNVLKTHVNQHTGARPYQCTQCEMDFANWSNCNKHMKRKHGMTLAKNMLTSFGKLPLNPLTGLPKPLNNGSMVREWTEEIMGPRKRGKKTDGAGTSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -