Yseq033280.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010001556.1:36527-38982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 0.1 14.2 8.7 1 23 172 194 172 195 0.95 2 13 0.014 1.3 10.8 1.3 2 23 232 254 231 254 0.96 3 13 0.067 6.3 8.6 6.3 3 23 262 283 260 283 0.95 4 13 0.0025 0.24 13.1 0.0 1 20 287 306 287 307 0.96 5 13 0.029 2.8 9.7 0.1 1 23 316 338 316 338 0.97 6 13 0.028 2.7 9.8 3.7 2 23 342 364 341 364 0.94 7 13 0.13 13 7.6 0.3 3 23 385 405 384 405 0.98 8 13 0.035 3.3 9.5 6.1 1 22 411 432 411 435 0.89 9 13 0.0017 0.16 13.6 2.5 1 23 447 470 447 470 0.98 10 13 6.7e-05 0.0064 18.0 4.5 1 23 476 498 476 498 0.97 11 13 0.0014 0.13 13.9 2.3 1 23 504 526 504 527 0.96 12 13 0.0092 0.87 11.3 1.6 2 23 534 556 533 556 0.95 13 13 0.0001 0.0099 17.4 0.1 2 23 562 584 561 584 0.94
Sequence Information
- Coding Sequence
- ATGATTTCAGACGATGCAATAAAGGACATAAAGCTCAAAAATGAATTTATCAGAATTAATTCTAACCTAAAAAATGTTTTGCATTCCGTAAGTTTTTGTGGAATCTGCTTAGGTACCACGCAAGAAATGTTCCATATGGAGAATTTCTTGAGTTTCAACGAAGATTTTAAATCTTGCACAACACAGCAGATGGTTTGGGAAATATTCGAAAAGACGGAAGGCAGCAATTTTCCAAGCAAATATGTATGTGATGCATGCTGTAATGAGCTAATCCAAGCTTACATGTTCATTGTAAAAGCTAGAAACTCGTCTAAAATACTAAACAGTTACTTGGATCAGATATACGATCAACTTGATGATGTTGAAACCATGGTTAGAAAAACGAACAAGACTGATGTTGAAAATGCTATCATCATGTTACAGGACAAATTTTCTAGCCAAATAACTCCTGAACAAGAGTTAATAGACACTTCTGGTGATGATTGGTCATGCAATGAATCAAATGATGATGAATATATATGTTGCCACTGCAGCAAAATGTTCACAAATAAGAAAAGTCTACTTGTTCATACTAAAATGCACCATTGCAAGAAAACACGGGACAAATGTACCGAATGTATGGCAGATTATTGTGCCCATGACAAATATTTGGAAGATATCGACAAACAAAGAAAAAATGGGTCAAACATTTTGAAGTGCCTCGACTGTGATTTTACATGCGCAAAGAAAAATGGTCTTATCTCTCATGTGAACAAGGAGCACCTTAAACTATTTACACACTTATGTGAAAGCTGCGGTCAAAACTTCCACTCTAAACCATTGTTATACCATCATATGAAGAAATACCATGGCAGAGAATATATTTGTGACTACTGCGATCTGCAATTCAATGACAACCCGTCTTTAGTTCAACATATTGTGGAATGTCGATCAGTTGAAAGAGAATTCATGTGTGCAGAATGTCCTGCTTCATTTGATATCATTCAGAAGCTTAATAAACATTTGGAAAAACATAAAAAAATATCATGTGGCCTCTGCTCTAAGAAAGTAAAGAATGAACACTTCCTCAAAAGGCATATGCATTATGCACACATGGCAAATTATGTTAAGGAAAAGAAAGAACCACAAGAGAGAGATAATCGACCCAGACTATGCTCGGTGTGTCCAGCTGTACTACACTCTCTAACAGAACTAAAAGATCATTTGAACAGTCACGATCCAGTAGAAAAACACCACTGTCATGTTTGCAAAAAACAGTTCAATACAAGAAAAGAATATAACATCCATGTCAGTTCGCTGACCCATGCTCGTCGAGTCAACCCAAATGCAGAGTTCAATTTTAAATGCACAGACTGCACCTTCACTAGTAAAAGTAAAGCGATGATGGAAAATCACCAAAACACATTCCATTTAAAAGTCAAACCATATCAATGTCACATTTGTTCCAAGAAGTTTACTACCCAACTCAATCTGAAATACCATGAGGACAGACATACAGGAATCAAGCGATTTCAGTGTAGTTTGTGCAGCAATTTATTCACTACCGCTCAGGGGTTAAAAAAGCATATTCTTCGACATCACTCTGAGAGACGACCAATACCTTGTGAGTCCTGTGATAAAACATTTGTATGTCAAAGTGAATTAAATCTTCATAAACAAAGAAATCACTCTGAGAAGTCAATACCATGTCTACTGTGTGGAGTCAAGTTTTCTTCGAGAGCAAACTTAAGGGCTCATATCTTCAAGGTTCATTTCAAGAGTAAGGAGCAATTTGAGGAGTTTATGACGTCAAAGAGTGTCTCCAAAGAGTTTTATGAGATGTTCAGAGACCATAGACTCAACTTCTAA
- Protein Sequence
- MISDDAIKDIKLKNEFIRINSNLKNVLHSVSFCGICLGTTQEMFHMENFLSFNEDFKSCTTQQMVWEIFEKTEGSNFPSKYVCDACCNELIQAYMFIVKARNSSKILNSYLDQIYDQLDDVETMVRKTNKTDVENAIIMLQDKFSSQITPEQELIDTSGDDWSCNESNDDEYICCHCSKMFTNKKSLLVHTKMHHCKKTRDKCTECMADYCAHDKYLEDIDKQRKNGSNILKCLDCDFTCAKKNGLISHVNKEHLKLFTHLCESCGQNFHSKPLLYHHMKKYHGREYICDYCDLQFNDNPSLVQHIVECRSVEREFMCAECPASFDIIQKLNKHLEKHKKISCGLCSKKVKNEHFLKRHMHYAHMANYVKEKKEPQERDNRPRLCSVCPAVLHSLTELKDHLNSHDPVEKHHCHVCKKQFNTRKEYNIHVSSLTHARRVNPNAEFNFKCTDCTFTSKSKAMMENHQNTFHLKVKPYQCHICSKKFTTQLNLKYHEDRHTGIKRFQCSLCSNLFTTAQGLKKHILRHHSERRPIPCESCDKTFVCQSELNLHKQRNHSEKSIPCLLCGVKFSSRANLRAHIFKVHFKSKEQFEEFMTSKSVSKEFYEMFRDHRLNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -