Basic Information

Insect: Ypsolopha sequella
Gene Symbol: -
Assembly: GCA_934041175.1
Location: CAKOGU010001003.1:207239-217174[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.037 3.5 9.4 0.6 3 23 29 50 27 50 0.92

2 14 0.00031 0.03 15.9 1.8 1 23 88 110 88 110 0.98

3 14 0.0074 0.7 11.6 0.2 1 23 112 135 112 135 0.94

4 14 4 3.8e+02 3.0 0.7 1 15 142 156 142 164 0.73

5 14 0.0052 0.49 12.1 0.2 1 23 169 191 169 191 0.97

6 14 0.27 26 6.7 3.8 3 23 219 240 218 240 0.93

7 14 0.0002 0.019 16.6 0.1 1 20 275 294 275 296 0.95

8 14 0.058 5.5 8.8 4.1 1 23 309 332 309 332 0.96

9 14 0.095 9 8.1 0.1 3 23 339 361 337 361 0.89

10 14 0.085 8 8.3 3.7 3 23 368 388 367 388 0.96

11 14 0.061 5.8 8.7 0.3 1 11 393 403 393 407 0.88

12 14 0.0019 0.18 13.5 4.7 1 23 424 446 424 446 0.98

13 14 2.4e-05 0.0023 19.4 0.4 1 23 452 474 452 474 0.98

14 14 3.3e-05 0.0031 19.0 0.4 1 23 480 503 480 503 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.037	3.5	9.4	0.6	3	23	29	50	27	50	0.92
2	14	0.00031	0.03	15.9	1.8	1	23	88	110	88	110	0.98
3	14	0.0074	0.7	11.6	0.2	1	23	112	135	112	135	0.94
4	14	4	3.8e+02	3.0	0.7	1	15	142	156	142	164	0.73
5	14	0.0052	0.49	12.1	0.2	1	23	169	191	169	191	0.97
6	14	0.27	26	6.7	3.8	3	23	219	240	218	240	0.93
7	14	0.0002	0.019	16.6	0.1	1	20	275	294	275	296	0.95
8	14	0.058	5.5	8.8	4.1	1	23	309	332	309	332	0.96
9	14	0.095	9	8.1	0.1	3	23	339	361	337	361	0.89
10	14	0.085	8	8.3	3.7	3	23	368	388	367	388	0.96
11	14	0.061	5.8	8.7	0.3	1	11	393	403	393	407	0.88
12	14	0.0019	0.18	13.5	4.7	1	23	424	446	424	446	0.98
13	14	2.4e-05	0.0023	19.4	0.4	1	23	452	474	452	474	0.98
14	14	3.3e-05	0.0031	19.0	0.4	1	23	480	503	480	503	0.98

Sequence Information

Coding Sequence: ATGGCTCCACCCAACCCAGACAGAAAAAAAAACAATCAACCTTACCTTAAACTAACTACCATCGACATCATAGGAGGAATCTTTTGTAGTATTTGCAAAACTAGTTATCGGGACAAAAGGCGTTTTGAAGAGCACTACATTGAAGAACACCAAAACATTAACAATGATATCTCGTACACTTGCGTTGCTTGCTACAAAGAGTTCCCAAACTATTCACGCTTCAGGGGACACTGCTACACCAGTCATGTCAATAAAAGCAGATTCCAGTGCAAAAAGTGCTATAAATACTTCTCAAAGCAGACAGCGCTTGAAGAGCATGAAGCAACACACAGCTTCACATGCCCACCTCCATGCAACCAAGAATTTTCGTCTAAACAAGAGCTACAAATGCATAAATTAGTTCACAAAGATTCCGGTCCTCCGTACTCCTGTCAAATCTGCAAGAAGGAGATCACTCAAGTTGACTCTTGTGGGTGGCACATCGACGAACATGCCGTCTTCACTTACTCATGTCCAATATGCAGTGAAAACTTTGACAACAGAACATTGGCTGCCCAACATTTAACCAAGCACTTTGGCGATGATGCCAATATCATGCAAGTCTTGGAAGATAATCTGGAAGACTGTGACACGAATGACCTGGGAGGGATCCTCTGCTGCTACTGCGATAAAACCTACAAGTTTAAAACAGACTTCGACGAACACTTTCAAAACGACCACGAAGACGAGCTTCTGACATACACATGTAACATTTGCGAGAATCAGTATGACGTATATGCAAAATTTGCAGCCCATTGCTACAACCATTTAGTGAAAAAGAAATTCAAATGCGACAACTGCAACAAGACGTTCGCGCGCGTGTCCCTGCTGGTGACGCACGTGGGCGTGTGTGAGGCTCCCCCCCAGTTCGCGGTGCACAAGCCCTTCCACTGCCAGAACTGCGACCTCAGCTTCGCATGCAACTGGCGCCTCACTAAGCACATGAGGCTGGTACACGGGGACGAGAGTGTCAGGTGCTTGGAGCCTGATTGTGGGGAAGAGTTCGATAGCATGAAGAAACTAGTTCTGCATCAGCTGGAACATAAAAAGAACGAGAACTTctgccacgactgcgggctccagttcaagtctctctcgatgtgcgagaagcatttagacgtccacatgaagcggtcctactcgtgcccgatctgcgacaagaagttcgacgagctacaccaatccatgcttcgctccaagcacatccagcagcacttccaactagccctccatgtatgcaagacttgcgggaagatctacaacgcgcgtcaccgtctcatgacgcacatgaaaacccacaccggagcgaagaacttcgaatgcaagacatgtgggaaagcgtttccgacaatcgaacgtttaaacgaacacatgtatacgcacaccggggagaagccctacaaatgtgtggtgtgcggcaaggcgttcaccagctacccaaattggtacaaacacgtgaagaggatacacaacatcgACCCCAAAACTGTCAGGCACATGCTTCCATCCAAACAGACTGTCAAAATCGAAGGAGAGACGTATAAGATATCGGTAGTGGAAGAGGCGGAAGTTGTCAATATGGAAAGCAGTGATTCATCAAACGTAACGGAAGCAACAACGAATGATCTAGACCGTTCAAGTCCGAATCTCCTAGAGGAAGCGTACATGTTTGTTCAATCCATTTGCAGCGAGAATAGTATAGAGCTGGATCATATAGACCCTAGTATTCTGGACGACCTCCATAGAGACACCTCCAATACGAATGCTAATCCGAATGGCGACGCCGCTACATTCTCCAACTTGCAAGCAAATGGCGCGGTCGTTACAGAACCGTCAAGTCAACAGATGATGCAAACACAGAGCTCAGCCAACTACCCGCGTGAGTACGGTCCAGATTTCATCAACCAAGGTCTCGAAGCGTCCGTCTACAACGGACAAATCATCGACCTCGACGACCACATCCTGCCCCACATCGACCCCATGCTCACTATAAAGGAGCAGAACAATCCACAGGAACTGTTCATACAAAACATGACCAATGTCCCCTTTGATAACATACAGGATGCTGGTACTCCGATGGAGTTTCAACAGAAATGGGAGCCCCCGATTATTACCAAGATCTACCAGAATTACGGGTTCGCTGAGATGCCCGGTATTGGCTCTAATATACAGGATATGTACCGGTCTGTCATTCAAACAGATATCTATTAG
Protein Sequence: MAPPNPDRKKNNQPYLKLTTIDIIGGIFCSICKTSYRDKRRFEEHYIEEHQNINNDISYTCVACYKEFPNYSRFRGHCYTSHVNKSRFQCKKCYKYFSKQTALEEHEATHSFTCPPPCNQEFSSKQELQMHKLVHKDSGPPYSCQICKKEITQVDSCGWHIDEHAVFTYSCPICSENFDNRTLAAQHLTKHFGDDANIMQVLEDNLEDCDTNDLGGILCCYCDKTYKFKTDFDEHFQNDHEDELLTYTCNICENQYDVYAKFAAHCYNHLVKKKFKCDNCNKTFARVSLLVTHVGVCEAPPQFAVHKPFHCQNCDLSFACNWRLTKHMRLVHGDESVRCLEPDCGEEFDSMKKLVLHQLEHKKNENFCHDCGLQFKSLSMCEKHLDVHMKRSYSCPICDKKFDELHQSMLRSKHIQQHFQLALHVCKTCGKIYNARHRLMTHMKTHTGAKNFECKTCGKAFPTIERLNEHMYTHTGEKPYKCVVCGKAFTSYPNWYKHVKRIHNIDPKTVRHMLPSKQTVKIEGETYKISVVEEAEVVNMESSDSSNVTEATTNDLDRSSPNLLEEAYMFVQSICSENSIELDHIDPSILDDLHRDTSNTNANPNGDAATFSNLQANGAVVTEPSSQQMMQTQSSANYPREYGPDFINQGLEASVYNGQIIDLDDHILPHIDPMLTIKEQNNPQELFIQNMTNVPFDNIQDAGTPMEFQQKWEPPIITKIYQNYGFAEMPGIGSNIQDMYRSVIQTDIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -