Yseq003623.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000102.1:1391298-1396647[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00067 0.063 14.9 0.1 2 23 179 201 178 201 0.89 2 14 0.017 1.6 10.5 0.3 2 23 208 229 207 229 0.97 3 14 6.7 6.4e+02 2.3 1.0 1 23 235 256 235 256 0.84 4 14 0.021 2 10.1 0.2 1 20 261 280 261 282 0.91 5 14 0.016 1.6 10.5 0.1 2 23 320 342 319 342 0.94 6 14 8.8 8.3e+02 1.9 0.4 2 23 349 370 344 370 0.89 7 14 0.62 58 5.6 4.5 2 23 377 398 377 398 0.97 8 14 0.27 25 6.7 0.0 3 21 406 424 405 425 0.94 9 14 3.7e-05 0.0035 18.8 0.4 2 23 449 470 448 470 0.97 10 14 2e-05 0.0019 19.7 0.3 1 23 477 499 477 499 0.99 11 14 2.9e-05 0.0028 19.2 0.4 2 23 506 527 506 527 0.97 12 14 4.8e-05 0.0046 18.5 1.8 1 23 533 555 533 555 0.99 13 14 0.0021 0.2 13.3 4.5 1 23 561 583 561 583 0.97 14 14 0.0026 0.25 13.0 2.5 1 23 589 612 589 612 0.98
Sequence Information
- Coding Sequence
- ATGAGTGCTCCGAATTTAAAATATTGTCGCTTTTGTGCTGAACAAAAGCCCGACGCTGATTTAATACACGGTCAAGATTTTAGAGAAATAAAAGAAAAATTATCATTTCTTAAAATAAAAAACATATCATTTTCCACTAAAGACTCTCTCCCGAAGCATGTTTGTGTACAGTGCCACACTTCTTTAAACAAATCTCACGAATTTGTGGCAAAAATAAGACAATCACAAAAACAGTTGAGAGCAATCAAAAATGTTATCATAAACGCCGAGGTATCACCAAGCGACCATGTTAGTTATATTATCAAGAACGAAGAGTTATACAATCGTGACTATGAAAGTGATAACCCAATTATAGAATCTCATATCTCTGACACAAGTGAATCAGCCAATGAAACAAAAGAATCATTTACAAGAAAACACCTCGGTGACTTTTCACATGATGAAGCACAAGTATTTGAGAACAATCACTGCGTTGTGAAGTTAAAGGATGAACATAATGAATTAGTAGATAACTCCTGGACGGAGTATACATGGAGCTGCCAGTACTGTGATCAAGTATTTAGAAACATAGATGATTTGAGAGAACACGGTATAAATGCACATAATCTGTGCTGTGCACTGAAATGTGTAGATTGTGAACTGAAATTTAATAAGTTTGAGGAGTTTGTTGATCATGTAAGAATACATAGAGATACTCTCAGACACTACTGTGAATACTGCAATTTGAAATTGGAATCTGAAAATGCCTCTAAACATATTTCAGAACACAAAGAGAAAGGATTTCTTTGTGAAAAGTGTGCTCAAGTATTTGAGAACAAAGACGGGTTAACAGAACACACCACTAAGTACAATCAGTTAAAAAGAAAACTTGGTAACAATGGAAAATTAACTAAAAGAACAAAAAAAAGGAAGAGACTCGTTAAACTTAAAGATGAATCCTGGAAAGGCTATCCTTGGATGTGTCAGCTATGTGAGGAAATATTTGTCGACATGACTTCACTTAGAACTCATGTTAAGGAAATGCATGGCAAATGCTTCGCCCTGAAATGTATAGACTGTGATGAAGCCATGGAAAGTTATAGAGGATTTGTTGCACATGTGAGAAAGCACAGAAAATATTTGAAACGACAGTGCCACTACTGTAATCACAAGTTTGAGAAAGGCCAAAACAGAAGTGAACACATCGCGACACACTTCACTGAGTCCGCACGTCTTTGTGAAGGTTGTGGTGAGATCCTTCCTGATACTGATGCCTACAAACATCATATAGCTACGTACAATCCACCGAAGCCAAAAATAAAACCATGGACCAGAAGAGACCGGCCTCTTTGCATCGACGACGTCAAATGTGACGTCTGTCAAAAAGTTTTTAAAAGTGCGTATCTTCTTAGAGATCACAAAGTCACGCACACAGACAGAGATAAAAATTACACTTGCGATAGATGTGGTAAACCATTTTACACGGATTCTGCTTTACTAGCTCACCGGTCGACCCACGACGGTTTGAAGCCGGAAGTTTGCGAGATATGCCAGAAAGGATTTAGGACCGTATCTGATTTGAGGCAACACGTCACCACGCACACTGGAGACAAACCATTTCAATGTGAAGTGTGCCAACGCCGCTTCAGACTAAATAAACAAATGGTATCGCATATGAGAATGCATACAAATGAAAAGCCTTACAAATGTCAGTTTTGTGAGAAATCGTTTAGACACAGAAACGTGTTAAAAGAACACGAAAACCAGCATACAGGAGCAAGGCCGTATAGGTGCAAGGATTGTGGGATGGGCTATGGCAGTTGGAAGAGTTGCGAGAAGCATATGAAAAGCAAGCATGGCACAACGATGGCTAAAAGCGTTTGGACACCACATGGGAAGATTCCAATAGATCCTGAAACCGGGAAACCAAAGGAAGTCAAGGATATAGAAAAGTTTAAGGAGTGGGCGGAACAGTTACTTGCTACAAAAAGACAAAAGAAAACAAGTCAATTTACTGAAAAACTATAA
- Protein Sequence
- MSAPNLKYCRFCAEQKPDADLIHGQDFREIKEKLSFLKIKNISFSTKDSLPKHVCVQCHTSLNKSHEFVAKIRQSQKQLRAIKNVIINAEVSPSDHVSYIIKNEELYNRDYESDNPIIESHISDTSESANETKESFTRKHLGDFSHDEAQVFENNHCVVKLKDEHNELVDNSWTEYTWSCQYCDQVFRNIDDLREHGINAHNLCCALKCVDCELKFNKFEEFVDHVRIHRDTLRHYCEYCNLKLESENASKHISEHKEKGFLCEKCAQVFENKDGLTEHTTKYNQLKRKLGNNGKLTKRTKKRKRLVKLKDESWKGYPWMCQLCEEIFVDMTSLRTHVKEMHGKCFALKCIDCDEAMESYRGFVAHVRKHRKYLKRQCHYCNHKFEKGQNRSEHIATHFTESARLCEGCGEILPDTDAYKHHIATYNPPKPKIKPWTRRDRPLCIDDVKCDVCQKVFKSAYLLRDHKVTHTDRDKNYTCDRCGKPFYTDSALLAHRSTHDGLKPEVCEICQKGFRTVSDLRQHVTTHTGDKPFQCEVCQRRFRLNKQMVSHMRMHTNEKPYKCQFCEKSFRHRNVLKEHENQHTGARPYRCKDCGMGYGSWKSCEKHMKSKHGTTMAKSVWTPHGKIPIDPETGKPKEVKDIEKFKEWAEQLLATKRQKKTSQFTEKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -