Yseq009989.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000293.1:68402-76165[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.17 16 7.3 0.1 2 20 75 93 74 94 0.94 2 19 0.67 63 5.4 0.3 2 23 120 144 119 144 0.92 3 19 0.001 0.097 14.3 0.3 1 23 166 188 166 188 0.96 4 19 0.00017 0.016 16.8 0.2 2 23 193 215 192 215 0.95 5 19 8.1 7.7e+02 2.0 0.2 1 21 221 241 221 242 0.91 6 19 1.2 1.2e+02 4.6 0.2 1 23 249 272 249 272 0.91 7 19 0.097 9.2 8.1 0.9 1 14 279 292 279 302 0.83 8 19 0.0097 0.92 11.2 3.1 1 23 306 328 306 328 0.95 9 19 0.00097 0.092 14.4 1.2 1 23 334 356 334 356 0.96 10 19 0.17 16 7.3 0.1 2 20 394 412 393 413 0.94 11 19 0.67 63 5.4 0.3 2 23 439 463 438 463 0.92 12 19 0.026 2.4 9.9 0.3 1 23 485 507 485 507 0.94 13 19 0.00044 0.042 15.4 0.1 2 23 512 534 511 534 0.95 14 19 8.1 7.7e+02 2.0 0.2 1 21 540 560 540 561 0.91 15 19 1.2 1.2e+02 4.6 0.2 1 23 568 591 568 591 0.91 16 19 0.097 9.2 8.1 0.9 1 14 598 611 598 621 0.83 17 19 0.017 1.6 10.5 1.0 1 23 625 647 625 647 0.97 18 19 9.9e-07 9.4e-05 23.8 1.2 1 23 653 675 653 675 0.98 19 19 0.0058 0.55 11.9 4.8 1 23 681 704 681 704 0.97
Sequence Information
- Coding Sequence
- ATGCGCCGTATCCGAATCGCGGGGCACAGGTGCAGGGTCAGGGTGCGTGTCGGTCGCAACGCGTGGCTTCCGTTCCGGGATCTGCTGCTGCTAAGCAAAGCGTGCTATGTCGAACCTCGCGAAGATGAAGAGACTACTTTGGAAGCTGCAAGGGCCAACTCCATGATTATATTAAAGCATTCCACGGCATACCCGTTCACACTGACTGGACGTAACTTGGTGAAATGCTCGTTTTGCGCCAAAGATTTTGAAGATCCTATTGATTTTCGAAACCATGTTGATTGTCAACATAAAGAAGTAGATAGATCTGCCGCGCTGTCTAGGAAAAGAGTAATTCGAATTGATATAACTGGTCTCCGATGTAATAATAACTTGTGCGTAAAATTGTTTGATTCACTAGAGATGTTGTCGAACCATTTGAAAGATGAACATGATCTTAACATAGAAGCAAGGCCGAATTTCTCACTCGTGCCTATGAAACTAGTGAAGGATCGCTATGTCTGTGTTATATGTGAGAAGAAATTCACGGGATTACGGGAATTATCCAGACACTCGGGAACGCATTTTAAAAGAGTTACTTGCGATGTTTGCGGTAAAAATTTCGAGACATCGAATGGATTGAACGATCATACTATAATGAAACATTCTAAAAATAATAAGCACTACTGCAAACCATGCAAAGGAAGTTTTCCATCTAAAGAAGCGAAAATAGCACATGTTCGGGAAAACAAGGCTTGCATGCCTTTCCGGTGTATCTATTGCGAAGAACGTTACATATTCTGGGAAGCCAAAGAGCGACATATGGTCGAAATGCATGGGCATTCAAAGAAGACGTATCCCTGCACAGAATGCGATAAAATTTTTGAAACTAGGACGGTTTACTACTTTCATTATAAGGCGGCGCATACAAAAGAATTCCAATGTCAATATTGCAAACAAGGTTTCGGGTCCCGTGGGCATCTCCTAGATCATTCATTTAAACATACTGGAGAAAGACCACACAAATGCAGTCAGTGCGGCAAGGGTTTCACAACCGTTAGGATCTTGAGAAAGCATATTGTTATACACGATGATAGCGAAGATGAAGAGACAACGTTGGAAGCTGCAAGGGCCAACTCCATGATTATTTTAAAGCATTCCACGGCATACCCGTTCACACTGACTGGACGTAACTTGGTGAAATGCTCGTTTTGCGCCAAAGATTTTGAAGATCCTATTGATTTTCGAAACCATGTTGATTGTCAACATAAAGAAGTAGATAGATCAACCGCGCTGTTTAGAAAAAGAGTAATTCGAATTGATATAACTGGTCTCCGATGTAATAATAACTTGTGCGTAAAATTGTTTGATTCACTAGAGATGTTGTCGAACCATTTGAAAGATGAACATGATCTTAACATAGAAGCAAGGCCGAATTTCTCACTCGTGCCTATGAAACTAGTAAAGGATCGCTATGTCTGTATTATATGTGAAAAGAAATTCACGGGATTACGGGAATTATCCAGACACTCGGGAACGCATTTTGAAAGAGTTAGTTGCGGTGTTTGCGGTAAAAATTTCGAGACATCGAATGGATTGAACGATCATACTATAATGAAACATTCTAAAAATAATAAGCACTACTGCAAACCATGCAAAGGAAGTTTTCCATCTAAAGAAGCGAAAATAGCACATGTCCGAGAAAACAAGGCGTGCATGCCTTTTCGATGTATCTATTGCGAAGAACGTTACATATTCTGGGAAGCCAAAGAGCGACATATGGTCGAAATGCATGGGCATTCAAAGAAGACATATCCCTGCACAGAATGCGATAAAATCTTTGAAACTAGGACGGTGTACTACTTTCATTATAAGGCGGCGCATACAAACGAATTCCAATGTCAATATTGCAAACAAGGTTTCGGGTCCCGTGGGCGTCTCCTAGATCATTCATTAAAACATACTGGGGAAAGACCACACAAATGCAGTGATTGCGGCAAGGGTTTTAAAAGCGTTAAGAACTTGAGAGCGCATATTGTTACACACGATGATAGTAAGAAGCATACCTGTTCCGTCTGTAGCAGGTTGTTTACAAAGAAATCTAGACTCAAAGACCACTTAAAACGACAGCATCCTGACACGTATGATGAAATGTTTAGTTAG
- Protein Sequence
- MRRIRIAGHRCRVRVRVGRNAWLPFRDLLLLSKACYVEPREDEETTLEAARANSMIILKHSTAYPFTLTGRNLVKCSFCAKDFEDPIDFRNHVDCQHKEVDRSAALSRKRVIRIDITGLRCNNNLCVKLFDSLEMLSNHLKDEHDLNIEARPNFSLVPMKLVKDRYVCVICEKKFTGLRELSRHSGTHFKRVTCDVCGKNFETSNGLNDHTIMKHSKNNKHYCKPCKGSFPSKEAKIAHVRENKACMPFRCIYCEERYIFWEAKERHMVEMHGHSKKTYPCTECDKIFETRTVYYFHYKAAHTKEFQCQYCKQGFGSRGHLLDHSFKHTGERPHKCSQCGKGFTTVRILRKHIVIHDDSEDEETTLEAARANSMIILKHSTAYPFTLTGRNLVKCSFCAKDFEDPIDFRNHVDCQHKEVDRSTALFRKRVIRIDITGLRCNNNLCVKLFDSLEMLSNHLKDEHDLNIEARPNFSLVPMKLVKDRYVCIICEKKFTGLRELSRHSGTHFERVSCGVCGKNFETSNGLNDHTIMKHSKNNKHYCKPCKGSFPSKEAKIAHVRENKACMPFRCIYCEERYIFWEAKERHMVEMHGHSKKTYPCTECDKIFETRTVYYFHYKAAHTNEFQCQYCKQGFGSRGRLLDHSLKHTGERPHKCSDCGKGFKSVKNLRAHIVTHDDSKKHTCSVCSRLFTKKSRLKDHLKRQHPDTYDEMFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -