Basic Information

Insect: Ypsolopha sequella
Gene Symbol: -
Assembly: GCA_934041175.1
Location: CAKOGU010000022.1:106861-135091[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00052 0.049 15.2 0.2 2 23 138 159 137 159 0.93

2 11 0.00014 0.014 17.0 0.5 1 23 165 187 165 187 0.96

3 11 4.5e-05 0.0043 18.6 0.6 1 23 285 307 285 307 0.98

4 11 3.9 3.7e+02 3.0 0.5 2 23 314 336 313 336 0.92

5 11 0.00068 0.065 14.8 0.2 3 23 397 418 395 418 0.90

6 11 0.01 0.94 11.2 0.2 1 23 438 460 438 460 0.93

7 11 3.5e-05 0.0034 18.9 0.2 1 23 488 510 488 510 0.98

8 11 0.00081 0.077 14.6 0.2 1 23 516 538 516 538 0.97

9 11 0.00046 0.043 15.4 0.3 1 23 544 566 544 567 0.95

10 11 0.0091 0.86 11.3 1.2 1 23 580 602 580 602 0.96

11 11 0.0019 0.18 13.5 0.1 1 20 746 765 746 768 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00052	0.049	15.2	0.2	2	23	138	159	137	159	0.93
2	11	0.00014	0.014	17.0	0.5	1	23	165	187	165	187	0.96
3	11	4.5e-05	0.0043	18.6	0.6	1	23	285	307	285	307	0.98
4	11	3.9	3.7e+02	3.0	0.5	2	23	314	336	313	336	0.92
5	11	0.00068	0.065	14.8	0.2	3	23	397	418	395	418	0.90
6	11	0.01	0.94	11.2	0.2	1	23	438	460	438	460	0.93
7	11	3.5e-05	0.0034	18.9	0.2	1	23	488	510	488	510	0.98
8	11	0.00081	0.077	14.6	0.2	1	23	516	538	516	538	0.97
9	11	0.00046	0.043	15.4	0.3	1	23	544	566	544	567	0.95
10	11	0.0091	0.86	11.3	1.2	1	23	580	602	580	602	0.96
11	11	0.0019	0.18	13.5	0.1	1	20	746	765	746	768	0.93

Sequence Information

Coding Sequence: ATGGATGGTGAACCATTCTCCCTTCGCTGGGAGGAGGAAGAAGATGAGGAAAGGAGCACAAACTCAAATGTGGTGGCATGCCAAGAAGTAATTTATAGTACACAGTCTACTTCATATTCTAATATCGCCACAGAAACAATAATCCCAGATACAGATCAGATGGCAGCGGAGAATCTGATGTATCTATCCCAAGATGTTGTTAGCTACACAACTGCTGATTTAGATGACGGAGGAGTCGAGTGTGTCACAGAGGAGGTCATCACGGACGACTGggtcgtgcctggtgggcaggagagAGTTGAGGTCCCTCTGGACCAACTGACACAACCTGTATTGGATATAAAAGAAGACAATGACATCGATGTCCCGTTACCAACCGATCAAGACGAATACACAGCAATGCGACCCTGGCCGTGCGACTTCTGCTCCCGCCGCTTCCGCAAGAAGGCCGCCCTGATGAACCACATGGTCGCTCATCAGAACGACCGCCCGCACGCGTGCAACCTCTGCGGAGTCCGATATGTGAGGAAGGTCGACCTTATGAACCATCTGAAGGTCCATGCCTTCGTGCCCGATAACGATGATGAGGTGGATTATGAAGATGTACTGGAAAATAATCACATTGTCAAACCTAGAAAGAAAAGAGGTCGACGGAAAAAGATTCCAGAACCGGTCGAAGAGGACACAGAAATGTGGGAGAATATGACGTCGGCGCGCACTCAACAATGGTCCCGCAAGCAGCGTGAGGCGCCCTCCGCGGCTCCTCCGCCCCTCCCGCCGTCGCCCTCGCCGCCTCCTTCGCCCGTCGACCCGCCCTCACCCCCGCCGCCGCCCGCTGACCCCGCACGACCCTTTGTCTGTAAACATTGCGGGGTCGGCTTTGCGAGGGAGAAAGCCTTGCAGTCACATTCTAGGGTCCACGGAGGTGATTCCCCGCTGGAATGCCGGTCATGCGGCGAGCTGTGTTGGTCGCGAGAAGCGTTGGCGGCGCACACGCGGCGACGTCATCCACATTTACCCCCCGCGCAGGAAACTAGCAAACATTCACAGTACAAGGTGGAACCCGAGGAGGAAGAAGAAGAAGAAGAAGAAGATGACGACGATGACATTGAGTTCCGACTGTCACCGCAGCCGGAAGCGCCGCCGGAACGGCCGGTGTACGACACGGTCCGGGGCCCGGAACTCTTCTGTCAACATTGCGGCGTCGCTTTCCAGAGGGCCGATCTGTTGAGGAGGCACGTGGCTGCTGCACATAGCTACAAGCGTCACGACAGCGAGCGCAGCGTGGCGAGCGACGCGACGTGGGCGGAGCACACGTGTGACGTGTGCGGGGAGACGTGTAACGACGCCTTGTCGCTGCTGGCGCACGCCGAGGGACACACCTCGCCCGCCTCCAGACACCCGCCTAGGTTAAAAAATAGAAATAAGGGCCGAAACACATCGTCATCCAGCTCTAGACATTTCCCGTGTAGAGAGTGTGGCAAGATCTTCGGGTCGCGGTCGTCACAGCAGATCCACATACGTATCCACACAGGCGAGCGGCCGTACGCGTGTCGGTTCTGTTGGAAGGCATTCGCTGACGGGGGCACGCTGAGGAAACACGAGAGAATACATACTGGCGAGAAGCCGTACGCATGCGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTCGTGCTGCGGGAGCATGTGCGGTCTCACCATTCCGCACCTGACCGCAGAGCTAACGGCGGTCCCACGTACTGCTGTGTGGTGTGCGGTAGAACACTCCACACCAGCGCCGAGCTGGTGCAACACTTGATACAGCATTGTGACGCCAACACCGCGCTCAAGAGACAACCGCAGTCGGGCCCCCGCAAGTACAAGCGGCGGAAAAAGGTGAAGGACACGGTGAAGCGCGAGGCGAGCTCCCCCCCCTCGAGCGTCAAGTCGTGGTCGCCGCCGCCCTCGCCCCCGCGCCGCGCCCGTCGCCGCCGTGCCTCGCCCCCGCCGCCGCCACCGAGACCTCGGATGATACATACATCCGCAGGGGAACCCAGGCCGAGGACTAAACAGGTGCGTCACCGGCGTCCCCCACGCCGCCCCGCGGACGACCTGCGTGCCATCGCGCCGCACCTGCCGCCAGCGACGCCGTCCCCGCCGCCTGCGCCCGCCGCCTCACCCCCGCGGCCCATCACCATCAAGCAGGAGCTAGAGGAGATGGATAAAATACAGTTGGTGAGCAGCGCGAAAGGCGCCTACCGGTGTGAGATGTGCGACCTACGCTTCGATCGGCGCGACGCCTTGTTGTTGCACGTGCCGGTCCACATATGA
Protein Sequence: MDGEPFSLRWEEEEDEERSTNSNVVACQEVIYSTQSTSYSNIATETIIPDTDQMAAENLMYLSQDVVSYTTADLDDGGVECVTEEVITDDWVVPGGQERVEVPLDQLTQPVLDIKEDNDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKVDLMNHLKVHAFVPDNDDEVDYEDVLENNHIVKPRKKRGRRKKIPEPVEEDTEMWENMTSARTQQWSRKQREAPSAAPPPLPPSPSPPPSPVDPPSPPPPPADPARPFVCKHCGVGFAREKALQSHSRVHGGDSPLECRSCGELCWSREALAAHTRRRHPHLPPAQETSKHSQYKVEPEEEEEEEEEDDDDDIEFRLSPQPEAPPERPVYDTVRGPELFCQHCGVAFQRADLLRRHVAAAHSYKRHDSERSVASDATWAEHTCDVCGETCNDALSLLAHAEGHTSPASRHPPRLKNRNKGRNTSSSSSRHFPCRECGKIFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPTYCCVVCGRTLHTSAELVQHLIQHCDANTALKRQPQSGPRKYKRRKKVKDTVKREASSPPSSVKSWSPPPSPPRRARRRRASPPPPPPRPRMIHTSAGEPRPRTKQVRHRRPPRRPADDLRAIAPHLPPATPSPPPAPAASPPRPITIKQELEEMDKIQLVSSAKGAYRCEMCDLRFDRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -