Yseq007156.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ypsolopha sequella
Gene Symbol
-
Assembly
GCA_934041175.1
Location
CAKOGU010000212.1:402797-408017[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.6 2.5e+02 3.6 0.1 1 9 206 214 206 231 0.84
2 16 1.1 1.1e+02 4.7 2.5 1 23 295 317 295 317 0.95
3 16 0.0098 0.93 11.2 1.0 1 23 326 349 326 349 0.95
4 16 1 99 4.8 0.1 2 23 360 382 360 382 0.90
5 16 7.7e-06 0.00073 21.0 0.9 2 23 415 436 415 436 0.96
6 16 0.00054 0.051 15.2 1.4 1 20 442 461 442 462 0.95
7 16 0.019 1.8 10.3 0.3 1 23 471 493 471 493 0.94
8 16 0.00012 0.011 17.2 1.9 1 23 499 521 499 521 0.99
9 16 3.1e-05 0.003 19.1 4.8 1 23 527 551 527 551 0.93
10 16 0.13 13 7.7 3.7 1 23 712 734 712 734 0.97
11 16 0.00041 0.039 15.6 1.1 2 23 741 763 740 763 0.92
12 16 2.4e-05 0.0023 19.4 3.8 1 23 769 791 769 791 0.96
13 16 3e-06 0.00028 22.3 1.2 1 23 797 819 797 819 0.99
14 16 0.00017 0.016 16.8 0.3 1 23 825 847 825 847 0.98
15 16 0.015 1.4 10.6 4.5 1 19 853 871 853 875 0.87
16 16 0.08 7.6 8.3 6.6 1 23 881 904 881 904 0.89

Sequence Information

Coding Sequence
ATGAATAACGAGACTGAACAAATATTTCTCTTAAACTCCAATGGGGGCTCCATCCAGCTAACAGTTGAATCACAGAAGCCGACAGTAACTACATCGAATAACCTGCAAAATGTCCTCATCACGGACAACATGTGCAGAACTTGCGCCACAGTCACAGAGTTCATCATTCCGATATTCCATGGCGAAGGGCTGCAAAACAATTTGGCTGAAAAAATTCACAAACACTTACCTATACAGGTGTTGGAGAATGATGATCTCCCCCAGGCAGTGTGCTACCAGTGTGCCAGCACGCTGCTCGCCTGGCACGAGCTGGTGGAGTGTTGCGTGCAGGCCGACACAGCGTTGAGGACTCGACGGGCTGTCACTACCTCCAACATTCTTGTACAGGAAGTGAAGCCAGGACCAAGCACCGACACTTACGATGTTGCTGTACAACCAAATGTTGAAAAAGAAAAAGAACCACAGAATAAATCAACCCCATGTCAATTACCGGAACAAGACTATTTGTGCCATTTCAGATCAGAAAACACAAACCCACTTCACCAGACAGTGAGGAATGTGTTGGTGGAGTACTTACAATTGTTAGGAACAGATGAGGAACATTCAAACTATGATTTTGTTTGTGAAAAATGTGACAAATCAATTTTAACAACAATCGAGGGCCTAGCTGAACATCTGCAAACAAAACTGCACGTGACAGATAACTGTGAAAATACTGTCAAAATGTTTATTGAAGAGAACATTACATTCCAAGAAACATTAACTTTCTCGGAAATGTCAGTCTCTTCTGAACCTGAACCTGACCCGAGTCCAGCTCAAGCCGTTGAGGAGAAGATACTACCAACCAATACAATATCAAAACAGATCCACGAACTTGCAACATACTTTTGCCCGTTTTGTAACAGCATATTTACATCAAGTACCCGCCTCGTGTGTCATCTAAACATCCACACGGAGGTGCTGACGGAAGATGGGTTCGTCTGCACGAACTGTGATCGGAACTTCACCGAGAAGAGGCGCTTCGTCGAACATCTGCAGGAGCTGCACGTGCATCGCACGCTGCGTGACGAGGCGGCGACCTGTCGCTCCTGTGGCTTCCTCGCTACGGACCCGCGCCAGCTGCAGACGCACATAGCCGCCGCGCACGCCCAGCTCGAAGCCAAGTGCTCCCGGATCAAACGCGGACCTACACCGGTTAAACAGAAGTGCAGAAGCAGTAAGGACAAGAAGTACATCCCCGCGTCGTGCCCCGAATGTGACAAGGTGTTCACGAACAAGTACAACATGTCGGAGCACCGGAAGTTGCACTTCAGCGAGCCGCGCTACCCATGCAACCAGTGCTCCCGGGTGTACCGGTTCAAGTCGTCGCTGCGCAAGCACAAGCTGTGTTCGCACGAGGGCGTGCTACGGCACGCGTGCTCGTGGTGCGGCGAGACGTTCCCAAAGCGCAGCGCTCGTGATGTGCACGCGCGGCTGCATTCCCGCGACGCCCCCTACCGCTGCACGCACTGCGGCAACGCATACCGCGCGCGCGACACTCTCACGAGACACCTCGAGACGCACGCCGACATCAGGAGATACGAGTGTCACGTCTGCGACAAGAAGTTTAGGAAACGAGCGCACCTCAATGCACACTCGCGTACTCGATCCCACAAGAGCCGTGCAGGCGCGGCCTACACAGATCTGGAACTAAACGCGCCGCACCTCGCTGACCGCTCGCGACCCTCCGCCCGCCGCGCGCTACAGTCCATACTAGAACCTGACACCTTCACGAGCTGCAGCGGAGACGAGCACAACGCGGGAGATACGGACCTGGAAGACGACGAGCCGTTGTCCACCATCGCCTTTCAGAAACAAAATGTCAGAAACACAGCTTACAATATATTTTACGACGCTCTCGTCAACTTCAGGACCCATTACGTGTCGAAGCACAAAGACGAGACGTGCTCATATCCGGAATTCACCGAGTCCAGCGACTCTGACGCTGTCGAGCACGAGCCGCCCACCCACGAAGAGCGCGACGTGGACAAGTTCGACGACCTCACCCGCTGCAACATGCGGAAGGACAGAATGGACGAAGCGACGCGGATCGAACTGAACGAGGTGCAGGTCAAGGTCAACGGGAAAATGTTGTACGCGTGCAAGCTGTGCGGGAAGAAGTTGAGCTCGACGCACACGTACGTGTTCCACCAACGCACGCACACGGGCGAGCGGCCGTGCGTGTGCCACGTGTGCGGCGCGCGATTCACGGCGCCCTCGGGCCTGCAGCGCCACCTCACGGAGACGCACGAGCGCGCGCGGCGCCACGCCTGCTCTCTCTGTGGGAACCACTTCGCCAACTCGCAGAACCTGAAGCAGCACATGCGCACGCACACCGGCGAGAAGCCCTACGTGTGCGCGCGGTGCGGCAAGCGGTTCGCGCAGAGCGGCTCACTGCACGCGCACCGCCGCACGCACTCGGATCATTTTCCCTTCCAGTGTGCGGAGTGCGGTGCCAAGTTCCGCATCCGGTCCGGGCTCGCGCGCCATCGGCTCAAGCACACCGGGGAGCGGCCACACGTGTGCGTGCACTGCGGGAAGGCGTTCCGACAGAAGCACGAGCTTAACTGTCACAGCGCTGCGCACTCGCAGGACAAGCCTCACGCTTGTCTCGTGTGCGGCGCCACCTTCAGGCAGAAGAGGACATTGAAGCATCACTGCAAGAAGCTCCACGAGAGTGCGGCGCCGGCCAGTCCCGTGCCGATACTCTACTCGCAAGTGCGGCAGTACGGCACCGACATGTTATGA
Protein Sequence
MNNETEQIFLLNSNGGSIQLTVESQKPTVTTSNNLQNVLITDNMCRTCATVTEFIIPIFHGEGLQNNLAEKIHKHLPIQVLENDDLPQAVCYQCASTLLAWHELVECCVQADTALRTRRAVTTSNILVQEVKPGPSTDTYDVAVQPNVEKEKEPQNKSTPCQLPEQDYLCHFRSENTNPLHQTVRNVLVEYLQLLGTDEEHSNYDFVCEKCDKSILTTIEGLAEHLQTKLHVTDNCENTVKMFIEENITFQETLTFSEMSVSSEPEPDPSPAQAVEEKILPTNTISKQIHELATYFCPFCNSIFTSSTRLVCHLNIHTEVLTEDGFVCTNCDRNFTEKRRFVEHLQELHVHRTLRDEAATCRSCGFLATDPRQLQTHIAAAHAQLEAKCSRIKRGPTPVKQKCRSSKDKKYIPASCPECDKVFTNKYNMSEHRKLHFSEPRYPCNQCSRVYRFKSSLRKHKLCSHEGVLRHACSWCGETFPKRSARDVHARLHSRDAPYRCTHCGNAYRARDTLTRHLETHADIRRYECHVCDKKFRKRAHLNAHSRTRSHKSRAGAAYTDLELNAPHLADRSRPSARRALQSILEPDTFTSCSGDEHNAGDTDLEDDEPLSTIAFQKQNVRNTAYNIFYDALVNFRTHYVSKHKDETCSYPEFTESSDSDAVEHEPPTHEERDVDKFDDLTRCNMRKDRMDEATRIELNEVQVKVNGKMLYACKLCGKKLSSTHTYVFHQRTHTGERPCVCHVCGARFTAPSGLQRHLTETHERARRHACSLCGNHFANSQNLKQHMRTHTGEKPYVCARCGKRFAQSGSLHAHRRTHSDHFPFQCAECGAKFRIRSGLARHRLKHTGERPHVCVHCGKAFRQKHELNCHSAAHSQDKPHACLVCGATFRQKRTLKHHCKKLHESAAPASPVPILYSQVRQYGTDML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-