Yseq010146.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000296.1:7779-14495[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 10 8.0 3.6 2 23 158 180 157 180 0.94 2 13 1.4e-05 0.0014 20.1 2.5 1 23 185 208 185 208 0.96 3 13 0.00053 0.051 15.2 2.6 3 23 213 233 212 233 0.98 4 13 0.00028 0.027 16.1 0.1 2 23 237 259 236 259 0.97 5 13 0.00061 0.058 15.0 0.7 1 23 273 295 273 295 0.98 6 13 0.0037 0.35 12.5 5.7 1 23 327 350 327 350 0.93 7 13 6.6e-06 0.00063 21.2 2.4 2 23 377 398 376 398 0.96 8 13 4.2e-05 0.004 18.7 2.5 1 22 403 424 403 424 0.96 9 13 3.5e-06 0.00033 22.1 0.9 2 23 441 463 441 463 0.95 10 13 6.5e-05 0.0062 18.1 2.0 1 23 469 491 469 491 0.97 11 13 0.0029 0.28 12.9 1.1 1 23 497 519 497 519 0.97 12 13 0.0095 0.91 11.2 3.2 1 23 525 548 525 548 0.97 13 13 7.6e-05 0.0072 17.8 1.7 1 23 553 575 553 575 0.98
Sequence Information
- Coding Sequence
- ATGATTACCGCAATCTCGAGTTATGTGCTGTCATTCGTTGAAGAGTTCTACGGTGATGAAGCCAAGATCGAAGGTCAGGAGGAGGACTGTACAGTAACTAGAAAAATATGTAGAAATTGTGCACAATCAACCATCATCAGTTACACATTTATTGAAATGTGCAAGGAGTCTAGAAAAACCTTAACCAATACTGTTGAGATGCTGTCACATTGCTTCTTTGATGATTCTATTGACAAAGAAAAATGTGCTAAATCTATTCATGTTGCTATAGACACTAGAAACAATAAGTTCACAAAGTTTTATGGTAAAATAGGAAAAGAAAATACCAAACTGAAACCTTTTCAAAGATTTAAACAAATGTTAAAAAGTCATAACAAAACTGCAATGGAAATCAAAAATATTAGTAAAGGTGATTATGACTATGATAATACGATTGATTATGATTCTGCAGATTATCTATCGGATGAAACTACCTGCCTCTTGTGTACTAAAACATTCTGTAACAAGAGAATATTTAAGCAACATATTGCACGTGTACATGGACCTAAAGTATACCAATGTAAGAAGTGCCCCAAATCATACAGTAAAGCACATTACTTGAATGACCATATGGCTAACAGTCATGTGCATGCTCTGTGCAAACTGTGTGGCAAAACTTTTGGCGGTGTTTATTGTTTAAAACGACACATGTTCACTCACAAGGAGCTCAAGTGCCCTAATTGTGGGGAAGAGTATGAGAACTGGATGCTATACAGACAACATGTTAAAACTGAACACTGTACTAATCCTGAAGAAAAAATTAATCTAACACCGCACTTTATCTGCAGCATTTGTAAAAATTCCTTTGATGAAAAAAGAGCTTTCCAAGAGCATATGATGAGTCATGCAAGTGAAGGGAAGACCCATAAAGTAGAGATGCTTGATATCCATGATTATACAGAGTTGGATGACAATGAAACTGACAATCCAACCAGTGAACACACATGCTTTTTGTGTTCTAAAATATTTTGTAATGAGTCAAGTTTAAGACGCCATAATAAACAAGCTCACAGTACTCTAAATAAACGTGATCAATGCCCCAAAATGCTGGAGAGCCACAACTTACAAGAGGGTGATCAGGAGAATTGGGTCTGTCATGTATGTGGCAAGTCTTTTGCCACACATAAATATTTGCAGGATCATTTATTGCGCCATAAGAACATAACATTTAAATGTGATAAATGTGGCAAAGAGTTTAAAAACAAGCTGTATTATAGGCGACATGTCAAGACACAATACTGTACAAAAGCTAAACAAAGGAAAATGAATGAAGAACGACCTGTTTGTGACATTTGTAAAAAATCATTTGGATCAAAATCAACTCTACGAGAACATATGCGGTTTGAACATGAAAATGGGAGACATTTCATTTGTAACTGGTGTCATAGACGGTTCCCTAATCCGAGCACTTATAAAACTCATATTGTGAAACACACTAGAGAAAGGAATTTTACCTGCCAAACCTGCAATGGAAAATTTGTGACTAAAGCAGCTTTGACCTATCATAATCGCTTACATACTGGTGAGACCCCCTTTAAATGTCATTATTGTGACATGAGTTTCCTCTCAGCATCTCGTAGGATGGCTCACATCCGAAGGAAACATATGGACCCAATGTTTGAGTGTAACATTTGCGGCAGAAAGTTTATCTTTAAAACTAACCTGGATTATCACGAGAAGAAACATAGTAATCCTCAAAGCAAACTGTATGTGCCAAATGAATAA
- Protein Sequence
- MITAISSYVLSFVEEFYGDEAKIEGQEEDCTVTRKICRNCAQSTIISYTFIEMCKESRKTLTNTVEMLSHCFFDDSIDKEKCAKSIHVAIDTRNNKFTKFYGKIGKENTKLKPFQRFKQMLKSHNKTAMEIKNISKGDYDYDNTIDYDSADYLSDETTCLLCTKTFCNKRIFKQHIARVHGPKVYQCKKCPKSYSKAHYLNDHMANSHVHALCKLCGKTFGGVYCLKRHMFTHKELKCPNCGEEYENWMLYRQHVKTEHCTNPEEKINLTPHFICSICKNSFDEKRAFQEHMMSHASEGKTHKVEMLDIHDYTELDDNETDNPTSEHTCFLCSKIFCNESSLRRHNKQAHSTLNKRDQCPKMLESHNLQEGDQENWVCHVCGKSFATHKYLQDHLLRHKNITFKCDKCGKEFKNKLYYRRHVKTQYCTKAKQRKMNEERPVCDICKKSFGSKSTLREHMRFEHENGRHFICNWCHRRFPNPSTYKTHIVKHTRERNFTCQTCNGKFVTKAALTYHNRLHTGETPFKCHYCDMSFLSASRRMAHIRRKHMDPMFECNICGRKFIFKTNLDYHEKKHSNPQSKLYVPNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -