Yseq003987.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000110.1:41392-56275[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.015 1.5 10.6 0.1 1 23 190 212 190 212 0.98 2 20 0.19 18 7.2 1.6 1 23 219 241 219 241 0.97 3 20 0.69 66 5.4 1.0 1 23 245 268 245 268 0.96 4 20 0.5 47 5.9 0.5 1 23 272 295 272 295 0.92 5 20 0.0075 0.71 11.6 0.8 1 23 298 321 298 321 0.97 6 20 0.0075 0.71 11.6 0.8 1 23 346 369 346 369 0.97 7 20 0.0075 0.71 11.6 0.8 1 23 394 417 394 417 0.97 8 20 0.0075 0.71 11.6 0.8 1 23 442 465 442 465 0.97 9 20 0.0075 0.71 11.6 0.8 1 23 490 513 490 513 0.97 10 20 0.0075 0.71 11.6 0.8 1 23 538 561 538 561 0.97 11 20 0.0075 0.71 11.6 0.8 1 23 586 609 586 609 0.97 12 20 0.0075 0.71 11.6 0.8 1 23 634 657 634 657 0.97 13 20 0.0075 0.71 11.6 0.8 1 23 682 705 682 705 0.97 14 20 0.0075 0.71 11.6 0.8 1 23 730 753 730 753 0.97 15 20 9.8e-05 0.0093 17.5 2.0 3 23 817 838 817 838 0.97 16 20 0.0043 0.41 12.3 0.7 2 21 858 877 857 882 0.93 17 20 0.00033 0.031 15.9 0.4 3 23 890 911 889 911 0.96 18 20 0.0022 0.21 13.3 2.8 1 23 917 940 917 940 0.94 19 20 9.3e-06 0.00089 20.7 1.9 3 23 951 971 950 971 0.98 20 20 0.0015 0.14 13.8 0.1 1 23 977 999 977 999 0.95
Sequence Information
- Coding Sequence
- ATGTTGTATGTCTCGCTGTGTTGGGAATGCCGAGCTGTGTTAAATAAAGTACACAAGTTCCAGCTTCAAATCCAACAAGCTCAACAAATACTGCAACAATCTACTCTCATATATACGTTACAAAAACTATCAAACTTGAACATAGTAAAAATTCACCAGAGCTCTACAGGAGCTGATGATGGGATTAACACCGACTTTGATGACAAGCCATCAAGTATTGTTGTAGAAAATTTACAAAGTAACAACAAGAATGAAATTGCAGGTGATGTTGAAGAAAGCTACGATTTCCCATTAGACGATGTCAAACTAGAAAATATAGATAATTACTTAAGTGATCATGAACATATACCTTCAAAAGCATGTAAATCAACAAAAAACATCGAAAAAGCGCCTAAGCAACGAAAGTGGAATCTGCAAATCAGAAAGACTCTCAAAAAGCACATGGAAACTATAGATTTTATACCAGAAGCAAATGAAAGACATTATTCTGAGTTAAAATTTAATAGAAAACAGTTTGAAAAACTTTTAGAGAAAGAAAGGAGGTACAAGTCTTATACCAGCAGACAATACAGATGTAAAATATGTGTTGTTGGATTTGACAATGAGTCGGACTACTTAGAACATGAGAATATACATGAACAAGGTTTTGGTAAATTCTCATGTAAGGCGTGCAACATATATTTCAAAACGCAAGAAGATTCACAAAGTCATCAAAATAATCACTACATCGGTTACAAATGTAACATGTGCAGGTTCAAGTCGACGAAAGCTGAAGAACAAGACGCGCATGTGAGGAGCAGACACAAAGTAGCTTTTAAATGTACGACTTGTGGCGACATCTTTGGTCTCCGAGTGCAGTACTCGCGACACTACAGCGAAGCACACATGAGGTACATCTGCGACTATTGTGGGAAGGTGAAGCGACAGAGACACATGATCGAGGCCCACATCAGGTACATACATCTCTGTCATCACCTCGTATTGTTCAGTCTCCGAGTGCAGTACTCGCGACACTATAGCGAAGCACACATGAGGTACATCTGCGACTATTGTGGGAAGGTGAAGCGACAGAGACACATGATCGAGGCCCACATCAGGTACATACATCTCTGTCATCACCTCGTATTGTTCAGTCTCCGAGTGCAGTACTCGCGACACTATAGCGAAGCACACATGAGGTACATCTGCGACTATTGTGGGAAGGTGAAGCGACAGAGACACATGATCGAGGCCCACATCAGGTACATACATCTCTGTCATCACCTCGTATTGTTCAGTCTCCGAGTGCAGTACTCGCGACACTATAGCGAAGCACACATGAGGTACATCTGCGACTATTGTGGGAAGGTGAAGCGACAGAGACACATGATCGAGGCCCACATCAGGTACATACATCTCTGTCATCACCTCGTATTGTTCAGTCTCCGAGTGCAGTACTCGCGACACTATAGCGAAGCACACATGAGGTACATCTGCGACTATTGTGGGAAGGTGAAGCGACAGAGACACATGATCGAGGCCCACATCAGGTACATACATCTCTGTCATCACCTCGTATTGTTCAGTCTCCGAGTGCAGTACTCGCGACACTATAGCGAAGCACACATGAGGTACATCTGCGACTATTGTGGGAAGGTGAAGCGACAGAGACACATGATCGAGGCCCACATCAGGTACATACATCTCTGTCATCACCTCGTATTGTTCAGTCTCCGAGTGCAGTACTCGCGACACTACAGCGAAGCACACATGAGGTACATCTGCGACTATTGTGGGAAGGTGAAGCGACAGAGACACATGATCGAGGCCCACATCAGGTACATACATCTCTGTCATCACCTCGTATTGTTCAGTCTCCGAGTGCAGTACTCGCGACACTACAGCGAAGCACACATGAGGTACATCTGCGACTATTGTGGGAAGGTGAAGCGACAGAGACACATGATCGAGGCCCACATCAGGTACATACATCTCTGTCATCACCTCGTATTGTTCAGTCTCCGAGTGCAGTACTCGCGACACTACAGCGAAGCACACATGAGGTACATCTGCGACTATTGTGGGAAGGTGAAGCGACAGAGACACATGATCGAGGCCCACATCAGGTACATACATCTCTGTCATCACCTCGTATTGTTCAGTCTCCGAGTGCAGTACTCGCGACACTACAGCGAAGCACACATGAGGTACATCTGCGACTATTGTGGGAAGGTGAAGCGACAGAGACACATGATCGAGGCCCACATCAGGTACATACATCTCTGTCATCACCTCGTATTGTTCAGTCTCCGAGTGCAGTACTCGCGACGAAGACGTTTACGCGACGACGTTACGTTACGCCTCACACTGCGGGCTGCGGCTCGCAAGGCTCGGGATGACATCGATGCAGATCGTATCGGTGGTCGGACCAGTCGGGCGTCCGCACTACGGTACCACACGAGCGGCGGCTGCAAACTGTGCAATCGAACGTTCACTGACTTCACGAATCTAGAGAAGCACTACCGCTACGTGCACAAGATGGAGATCTGCCAGAGGAAAAGGGACTCTAAGCCCATAGTCGTAGAGAACATGTACTGCGTCGAGTGTGACAAGCAGTATGAAACGGAGTACCAGTACCGGAAGCACTTGAGGAACAGCGCCAAACACGCGACCAAGGTTCGCGTGGCGTGTCCGTCGTGTGGGAAGGTGTTCACTCGCATGAACTACATGAAGAATCACTTCAGAGTTGTTCACGAGAACACTTCCAAGCATCGCTGCACCCTGTGCGAGAAGAACTTCGTGTCCCCATTCTCGCTGCGGCAGCACAACCGCTTCGTGCACGAAAAGATACCGCTGCCCAAAGACAAGATATGCACGGAGTGTGGACGGGGCTTCTCTTCAAACCGCGTGTTGACACATCATATGCGCACGCACACAGGCGAGCGGCCGCACGCATGCGCGCTCTGTCCCGCCACGTTCGCGCGACGCGACGCGCTCAACACGCACGTGAAGGGACACGGAGGAGACGGGCGGCGGACCACCTTGAATTGA
- Protein Sequence
- MLYVSLCWECRAVLNKVHKFQLQIQQAQQILQQSTLIYTLQKLSNLNIVKIHQSSTGADDGINTDFDDKPSSIVVENLQSNNKNEIAGDVEESYDFPLDDVKLENIDNYLSDHEHIPSKACKSTKNIEKAPKQRKWNLQIRKTLKKHMETIDFIPEANERHYSELKFNRKQFEKLLEKERRYKSYTSRQYRCKICVVGFDNESDYLEHENIHEQGFGKFSCKACNIYFKTQEDSQSHQNNHYIGYKCNMCRFKSTKAEEQDAHVRSRHKVAFKCTTCGDIFGLRVQYSRHYSEAHMRYICDYCGKVKRQRHMIEAHIRYIHLCHHLVLFSLRVQYSRHYSEAHMRYICDYCGKVKRQRHMIEAHIRYIHLCHHLVLFSLRVQYSRHYSEAHMRYICDYCGKVKRQRHMIEAHIRYIHLCHHLVLFSLRVQYSRHYSEAHMRYICDYCGKVKRQRHMIEAHIRYIHLCHHLVLFSLRVQYSRHYSEAHMRYICDYCGKVKRQRHMIEAHIRYIHLCHHLVLFSLRVQYSRHYSEAHMRYICDYCGKVKRQRHMIEAHIRYIHLCHHLVLFSLRVQYSRHYSEAHMRYICDYCGKVKRQRHMIEAHIRYIHLCHHLVLFSLRVQYSRHYSEAHMRYICDYCGKVKRQRHMIEAHIRYIHLCHHLVLFSLRVQYSRHYSEAHMRYICDYCGKVKRQRHMIEAHIRYIHLCHHLVLFSLRVQYSRHYSEAHMRYICDYCGKVKRQRHMIEAHIRYIHLCHHLVLFSLRVQYSRRRRLRDDVTLRLTLRAAARKARDDIDADRIGGRTSRASALRYHTSGGCKLCNRTFTDFTNLEKHYRYVHKMEICQRKRDSKPIVVENMYCVECDKQYETEYQYRKHLRNSAKHATKVRVACPSCGKVFTRMNYMKNHFRVVHENTSKHRCTLCEKNFVSPFSLRQHNRFVHEKIPLPKDKICTECGRGFSSNRVLTHHMRTHTGERPHACALCPATFARRDALNTHVKGHGGDGRRTTLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -