Yseq039422.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ypsolopha sequella
Gene Symbol
-
Assembly
GCA_934041175.1
Location
CAKOGU010002826.1:11143-29418[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00025 0.024 16.2 0.0 2 20 118 136 117 137 0.95
2 20 0.00022 0.021 16.4 1.8 2 21 315 334 314 335 0.91
3 20 1.4 1.3e+02 4.4 0.5 2 23 340 361 340 361 0.92
4 20 0.43 40 6.1 1.6 2 19 367 384 366 389 0.94
5 20 8.9e-05 0.0084 17.6 2.1 1 23 394 416 394 416 0.95
6 20 2.9 2.8e+02 3.4 9.8 1 21 419 439 419 440 0.94
7 20 0.0026 0.25 13.0 0.1 1 23 452 475 452 475 0.92
8 20 1.5e-05 0.0014 20.1 0.3 1 23 481 503 481 503 0.98
9 20 0.002 0.19 13.4 0.0 2 23 511 532 510 532 0.97
10 20 9.7 9.2e+02 1.8 0.4 1 23 538 561 538 561 0.84
11 20 1.5e-05 0.0015 20.0 0.2 2 21 688 707 687 708 0.94
12 20 0.17 17 7.3 0.1 3 23 715 736 714 736 0.96
13 20 0.11 10 8.0 0.1 1 23 741 764 741 764 0.94
14 20 1.7e-07 1.6e-05 26.2 0.5 1 23 769 791 769 791 0.98
15 20 2.7 2.6e+02 3.5 0.5 2 20 795 813 795 815 0.91
16 20 0.00014 0.014 17.0 2.7 1 23 841 864 841 864 0.95
17 20 0.00032 0.03 15.9 0.8 1 23 870 892 870 892 0.97
18 20 0.063 6 8.7 0.1 1 23 898 920 898 920 0.97
19 20 0.0057 0.54 12.0 0.3 1 23 926 949 926 949 0.94
20 20 0.0047 0.45 12.2 2.5 1 23 955 978 955 978 0.97

Sequence Information

Coding Sequence
ATGGTGGAGAATCATCTGGAATCATTGCTGCCAAAGAGCTTGTGCGGCGATTGTGTAAGGTTAGCCGTAGTGACAGTAAAGTTCATCGAAAACTGCCGCAAATCCGCAGAAACATGGATGGATATACCCTCAAAGCTATCTGAACTATCCGAAGAAAAAACCAACGCTAAAACCCTTTTTGCTATAATTGAAAACGACACAGTCATCGTGAAGAAGGTCGTTAAGGAAGTAGAGCCAAATCCCAGAAGTGCTCTAAAAGCGTTCAAGTACAAGATGTACAGTGTGAGAGCCGGTGAACGACGCAATGAAAAAGCGAGACAGCTAAAAATGAATGACGGGCATTCAGATATTCGCTGCCCAGATTGTGACAAGCCATTCTCGGTTAACTATTACCTGAACTTACATCTCGTTGGCTCGACCATTAGGTCTTGTTGGGTTTGCCACGACATCGTAGATTTGGACAAATTTAAAGACCATTTAATACAACACAATAAGGTGGTGTTTTCCTGCAGCATCTGTATGGAAGTCTCTGATAGTGAAAAACAGATAACGCGATGTCAAAGGAGGCGGACTGACGCAAGATGGTGGTTTCAGGTGGAGGAGGATCCTGGCCTCCCGCGGGGACTATGTCGGGTCTGCGCTGAGGAGACCATTGCGGCCTTTCAGTTCCGTCAGCTCTGCGCAGACTCCGCGCAGCAGTGGGACCAGGCCGTCCATTCCTTGGCTCTTATTTACGAGCCAGAAGAACACGATAAGGCCTTCTACGTATTTTACAACCACAACGGTGAAACCGTTGTCAAAGAACGCATCAGACCCGTGAAGGACACTAGGGAAGCGTTCCTCAGGTTGACTGAGACTATCGACGTCCCTGTTAGCGTTTCAAACAGTCCTATTAAGACGAAAAAGAAAAAAAAGAAATGGCTCAGTCTTGCCATGTTCTGTAGATGCCCCGATTGCGGGAAGGAGTTCACTACGTCGAAAGACTTGGATTCGCACTTCAATAAAACGATGAAACGCGTCTGCAAGATGTGTGGTGAGATCACTTCCAAAACCAAATTAAGCGACCACTTATTTAAAGTACACGATGAATTTCTGATACAATGCTCCTTCTGCTACAAGCTGTTTAGAGACGAAGAGTCTTTGATGCAGCATTGCAGTGATTTACACGGTCCTGAATCGCATTCCTGCCAACACTGCGGTGAAGGATTTACCAGTGAAAGGTCTTTAAGAGCTCACATGTACGCTCACACGCTGTTCCATTGCACCTCTTGCAAGAAAAGCTTCGAAAATCGTAAATGCTACAAACACCACAAAAAGCAATGCAAAGATGATGTTCCGGCGACGCAAAGCATGTACAACTGCGACGAATGCGGCGCCACGTACGACAAGAAGCCATCTCTACGTATACACATAGTCCAAAAACACTTGAATGTCCTTCCTTACGTTTGCGCTATCTGTGGCAAGCGCACATCGACGCGAGCGCATCTGAATTCTCATCTAGCAGTGCACAAGCCTGAACGTATGAAGATACAGTGTGCGGAATGTGGAGCGGAGTTCCGTACTGAGCTAGGATACCAGTTGCATATGCGGATACATACTGGAGAAAAACCTTACGAATGTCAACTGTGTGGAGATCGCTTTCTCTCCGCTTCTAGGCGCCTCGACCACATAAATAGACGGCACAAGAGCACTCAAGACTTGCCTCATGGGTGCACAGAGTGCCCTGCTCGGTTCGTAGCCGTCGAACATTTGTGTCCCCAAGGCGTCTGCGTTAGTTGCGTCACCGCCACACTGCAAGCTTCAGAGTTGCGCACTCTCGTCAGGAACTCACAAAAGTTCTGGAACGACGCTCTCACAGCCTTGAGCAAACTACCCTCAGATGTCTCCGCCCCAGTACGTACCGTCTACGCATTCATCAAGGATGATAACTTGCATTTACTAAAAAACTACTCTGGCAGTGACTCGAAGACCGCGTTGCACCGCCTCAAAAACCGTCTGACGAAGAAGAAATCGGTCACAACAGAACGTAAGCCACGCGTCAACCGAAACGGGCCCTTGAGCGAATGTACCGATTGCGGGAAAGCGTTCAGCAGTCCTCATTACTTGAATGTTCATTTACAGAACAGCGCTCAAAAAGAAGCGTGCCTCATCTGCGGGACCATAGTAATACGCGGGAACCATTTGAAGGAACATTTACTTTCCGTTCACGGTCAGACCGCTTACTTGTGCTCTGATTGTCCGCTTCTATTCCCAAGTGAAGAAGAAGTGAATAAACACAAGAAAAACGCTCATAGATCGGGCGTTTTTACATGCAACGATTGTGGAAGAAGCTTCCCTAGATCGTCGAGCTTTGAGGCTCATTTACAAATGCACGCTGTCCGAACGTGTCGGGCTTGCGGAGCTCAGTTCGCTAACAGAGGCTGCTACAGAGAGCACAGGTCGGTCTGCGAGCCAGACGCGAAGCCCAACTCGAAAGATGTACGCAAAGATCTCCGTTCGAATATTCGAGATCCAGCTACTTTTACTTGCGATCACTGCGATAAAACGTACCATTCGAGGCCGCAACTAAAGAACCATATAATCTGGATCCACATGAATGTGCGGCCGCATCAGTGCCAGTGGTGCGGCAAGCGCTTTTACACTTCGGCACGTCTAGCTGAGCACACAATTGTTCACACAAGGGAACGAAACTTCGCTTGTGACATTTGTGGAGCTCGTCTAGTCACAAAAATGGCGATGGTATACCATAAGAGAAGGCATACGGGCGAGAAACCTTACGAATGCGAGGATTGTGGTGAAAGGTTCATATCTGCTTCGAGAAGATCTGAACACGCTAAAAGGCGTCACGGGAAAGGCACGATGTTCCAATGTCCCATGTGCGTGAGTCACTTCGTGCGTGGGCACGAGTTGAAAAAGCACATGGAAAAAGTGCACAAAAACGTACCGAAGGCTGGTATGAAGTTCCAAAAGGTTGAAGGTAAAGCGGTAAAAGTTTACAGATGCTTGCAAAGAACTGATGTGAAGTTAGAACATATTGCAGATGCAAATATAAAAGGTGAGCCGTTGATCGGGGCAGCGGCGGTTGCAGGGAGGGAGGGAGGGACGGCGGCGGCTGCTTCCTTTCGCTCCGTACCCACGCTCAGCGCCCGTGCACACTGCGATGATTCAGACGTCGCGCTCACGACCGCGCGAGCCACCACCGACGATGACGTGTATGCGGTGCAGGGGGCAGCGGCGGTTGCGGGGAGGGAGGGGATGACGGCGGCTGCTACCTCTCGCTCTGTACCCACGCTCAGCGCCCGTGCACACTGCGATGACTCAGACGCCGCGCTCTCGACCGCGCGAGCCACCACCACCGACGACGTCGTCGGCTCGCAATCTACCCTCAGATGA
Protein Sequence
MVENHLESLLPKSLCGDCVRLAVVTVKFIENCRKSAETWMDIPSKLSELSEEKTNAKTLFAIIENDTVIVKKVVKEVEPNPRSALKAFKYKMYSVRAGERRNEKARQLKMNDGHSDIRCPDCDKPFSVNYYLNLHLVGSTIRSCWVCHDIVDLDKFKDHLIQHNKVVFSCSICMEVSDSEKQITRCQRRRTDARWWFQVEEDPGLPRGLCRVCAEETIAAFQFRQLCADSAQQWDQAVHSLALIYEPEEHDKAFYVFYNHNGETVVKERIRPVKDTREAFLRLTETIDVPVSVSNSPIKTKKKKKKWLSLAMFCRCPDCGKEFTTSKDLDSHFNKTMKRVCKMCGEITSKTKLSDHLFKVHDEFLIQCSFCYKLFRDEESLMQHCSDLHGPESHSCQHCGEGFTSERSLRAHMYAHTLFHCTSCKKSFENRKCYKHHKKQCKDDVPATQSMYNCDECGATYDKKPSLRIHIVQKHLNVLPYVCAICGKRTSTRAHLNSHLAVHKPERMKIQCAECGAEFRTELGYQLHMRIHTGEKPYECQLCGDRFLSASRRLDHINRRHKSTQDLPHGCTECPARFVAVEHLCPQGVCVSCVTATLQASELRTLVRNSQKFWNDALTALSKLPSDVSAPVRTVYAFIKDDNLHLLKNYSGSDSKTALHRLKNRLTKKKSVTTERKPRVNRNGPLSECTDCGKAFSSPHYLNVHLQNSAQKEACLICGTIVIRGNHLKEHLLSVHGQTAYLCSDCPLLFPSEEEVNKHKKNAHRSGVFTCNDCGRSFPRSSSFEAHLQMHAVRTCRACGAQFANRGCYREHRSVCEPDAKPNSKDVRKDLRSNIRDPATFTCDHCDKTYHSRPQLKNHIIWIHMNVRPHQCQWCGKRFYTSARLAEHTIVHTRERNFACDICGARLVTKMAMVYHKRRHTGEKPYECEDCGERFISASRRSEHAKRRHGKGTMFQCPMCVSHFVRGHELKKHMEKVHKNVPKAGMKFQKVEGKAVKVYRCLQRTDVKLEHIADANIKGEPLIGAAAVAGREGGTAAAASFRSVPTLSARAHCDDSDVALTTARATTDDDVYAVQGAAAVAGREGMTAAATSRSVPTLSARAHCDDSDAALSTARATTTDDVVGSQSTLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-