Yseq014438.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000443.1:269171-277786[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.043 4.1 9.2 1.5 3 23 717 738 716 738 0.95 2 23 0.42 40 6.1 0.2 1 21 1177 1197 1177 1198 0.96 3 23 2.3 2.1e+02 3.8 0.3 1 23 1241 1264 1241 1264 0.86 4 23 0.028 2.7 9.8 0.2 3 21 1275 1293 1273 1294 0.95 5 23 0.21 20 7.0 0.1 2 23 1302 1324 1301 1324 0.90 6 23 0.19 18 7.2 1.5 3 23 1344 1365 1342 1365 0.95 7 23 0.0062 0.59 11.8 1.7 1 23 1371 1394 1371 1394 0.95 8 23 0.18 17 7.3 0.0 1 23 1422 1445 1422 1445 0.90 9 23 0.027 2.5 9.9 3.4 1 23 1450 1472 1450 1472 0.97 10 23 0.047 4.5 9.1 0.1 1 23 1478 1501 1478 1501 0.96 11 23 0.0032 0.3 12.8 1.3 1 23 1514 1536 1514 1536 0.97 12 23 0.00025 0.024 16.2 1.8 1 23 1584 1607 1584 1607 0.97 13 23 0.014 1.3 10.8 1.2 1 23 1674 1697 1674 1697 0.95 14 23 0.0024 0.23 13.1 1.4 2 23 1737 1759 1736 1759 0.95 15 23 0.46 43 6.0 0.0 2 23 1765 1787 1764 1787 0.94 16 23 0.014 1.3 10.7 0.2 1 21 1833 1853 1833 1854 0.95 17 23 0.0014 0.14 13.8 0.7 1 23 1864 1886 1864 1886 0.93 18 23 0.00011 0.011 17.3 0.4 2 23 1975 1997 1975 1997 0.93 19 23 2e-07 1.9e-05 26.0 1.3 3 23 2004 2024 2003 2024 0.98 20 23 0.7 66 5.4 0.4 3 23 2043 2063 2041 2064 0.94 21 23 0.057 5.4 8.8 0.0 1 23 2085 2107 2085 2107 0.98 22 23 0.036 3.4 9.4 0.6 1 23 2113 2136 2113 2136 0.94 23 23 0.00036 0.034 15.7 0.4 1 23 2145 2168 2145 2168 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGATTTACTGCCGATTTTTCCTACCACCAGTTCGGATGGGAGGGAACCTCCCGTCCTTGCATCAAAAATCAAGGATTGCGTCTCTGTCCAGATAAACGAGAATGACGACCTGCCAACTTGTGTCTGTAGGAAATGTGTGGACAATGTGAATAACTGGCACATATTTAAGAAAGTATGTGAAAGGACACAAATCAAACTTCAAACTTTGGTAAAAAAGGATGCCAGCCAACTAGAAGAGGTCAAAATAAAAAGTGAGCCACTATCTGATGAGGCTTATGATGATGGAGTGGTTATTCACGCATCATATCCTGGTATTGAGCAGAATGCTAGCTCTTCGCACAAAGTTCAGCCGGAGGGCCCTCCGATCTTGGCATCGCTTGGACTTACACCGAGGAGTGATAAGAATTGTGTGGATCCACGAATGGATTGGCAACGCGTCCATGCTATTTTGGACCTGGTTCAAGATGACGAGGTAATTGATTCACTGCAATCAATCGAAGAAAGTGATGTCCTCCAGCATTCTGACCATGACTCTGATACTGAGGTAGAACTTATGTCTGACATTGATGATGAATACATTGACTGCAAGAACGGTTACAGATGCAAGGACAAGACTGTACTGTCTAAGGACCCCAAAACATCACGCTTCAATATAAATGCAAAGATAAAACAGTCCATTCAGCTAAGAAAGCGAAAAGCTGCCGATATCAAGCACTGTCCCCGTCCTCAACATGCTTGGCAGTTATTGTTTACTGATGACATGCTTGAGCTCATTGTTGAATCCACTAATGAGAACATTCTAAGGAGACGACATGGCTATTCTTTATCAACATCCATTGAAGAAATTAAAGCGTTTATTGGAATTCTCTATCTCCATGGAATTATGAGGCCGACCCATCAGAAAAGGAGTGATCTTTGGCATGAGAAATATGGAATATCCAGTGTTAGGTGTTCCATGAAGCAGGATAGATTCAAGTTTATTGTGAAAAATATTTGTTTTGATAAAAATGATGATGATGATGGAATGCTCCAATATGATACAATGAAGCGTATGCGTAAAATATTTGAGATATTCGCCATGAACTGCAGAACTGTTTATGACATTGAGAATGTTGGTGTAATAGACGAGGTCATTGTACCAGTCTATGGGCCGTGTCCATTCCGATACAATATTGATAAAAAGCCAATGAAGAAAGGCATAAAATTGGTTTTACTTGTTGATCCAAACAACTTTTTTGTGAGCAACTTGGATGTTATCATTGACCCATATTTTGGTCCTGAGGAAATTGTGAAGAAGTTAGTTCAACATTTAGCCGGGTCAGGCAAGACTGTAGTCATGGATAGCTGGTACACATCCTGTACATTGATGGAAACTTTGAAGAATGAGTTTGGATTGTACAGTATCGCTGCTCTAAATCCAAAAGATGAGGTCATACCACCCATGTTCCTGTCGAGGCTGAGGAAATGTCGTACATTTATGACCGGTTTCCTTGATAATGATACTTCTTTGACATCATATGTGACGACTGGTGCTAAATCTGTAAATGTTCTATCGAATCATCCAAAGTTCTACAAGAGAGGGCATGCCAATCACACTACACCCGTGTCAATGTATAAAAAGAATCAGTCTGCCGTAGAAGTTGTAGATGTATTGATGCATTACTACACCACCATGCAATGTAGTAATGATTGGACGCTTTCCTTGTTCTACACACTACTAAATATTGCGTCAGTCAATGCCCAAGTCTTATGGAGTATGCAGTGTTCAACAAATGTACAAAAGCGGCGTTTATTTATACGGGATTTGGCTTTCGGTCTGATTGCAAATGAGTTCAAAGTTGAAGATATTCGCCCTTCTTTAATTGATCCTTCGAAGAAACTTTGTATGGACAAAGGCTTGCTTAACTTCCAAGGGCCTGATGGTCGAAAAAGGTGCAACGGTCATGAAGACGAGGAAGAAGAATATGAAGGAGAGCTGAATGAGAACACTCATTTCCCAAAAGTGCCCAACATGCCTGAAGTTTCCATCACTGTTATGCGACCCACAGGAGAAACTCTTCAGTCTCGCCAAGGAATTCAAGAAATTGCGTCTAAGAACTGTTTGGTATGTGACCGAGCCTACAGGTACTCCCACAATGCTCGAAGACATGAGCTTACGTCACACGGGTTCGACCGGTACACAAACAAAGTAACTAACACCAAAAAATCTAAATCTAAAAAGTCTCATATGCTACCGAAACTACGCCCTAACCCCTTTAATCCTAAAGCGAGATTAATGCCTAACCCAATCAGCCACAAACTCAAAATGCAGATGCTACCTAGCTTATCGCAGCAGCATCAGCCGATGCATTCAAAAAGGGTACCTCACAAAGTAATTCCAAAACCTGTCCCTGTAAAGACCTTACCACCAAAAGCACATAACAACCTACCATATCCACTCCGCATTAAGGCTCTGAAAGACTTGCAAATAAAAAAGAAGGAACCACAGATTTTAAAGACATTACTGACGTCTAAACCCGAAGTTTTAGTATCTGAACCAGAAATCATTAATTCAGGTGCAGAAAGTCCTGAAACCTTAATATCTGAACCAGAAATAGCTTCTTTCCAAGTTGAAGCTATTTTGACAGAACCAGATGCCTTCGACCAACAGCCCGAGGAAGACGAAGATGAAATGGATGGAGAAATACACAACAACCAAAGTGCGTACGACACAGTCGATATGGAGTCGGACAATGAGATAGAGATTGCTAGAGAGCAAGAAAATGATACCAATGAGCAACAAAATGATGAGCAAGAAGAAGAGCATGATCAAGGTGTAGTGATAAACGATAACGATAACGAGCAAGGTGTAGATCATGAGCAAATTGAAGATCATGAGCTAGAAGGAGAGCATGAGCACGACCAAGAAAGAATGAGTGATAATGAAAATCATGCTGAAGAAAGCCAAGTTAATGAGAACCCGGAAGAAAATCACGAAGAGACCGTTGAAGATCATGAGGATGGAGAAATTTATGACGGAGATCACTCTGAACAGAGAATCGAGGACGACTATGAAATTAAAGAGGATGACAATGATGGACTAGATCATTACCAAGATGCTCAGGACAATCAAGAAGAAAATGAAGATGACATAGATGAAGAGGAAGAAATGGCTCCTAGCCTAGCGCCAGTAGTCGAAATTAGTGAAGATATACAAAATAATTCAGTGGATAACAGTGAACACAACGACGAAGACGAACTGAATGAAGAAGAACTGGATGAGACGGCTGAAGCCAATGATAATATTATTGATGGCGAACAGACAGTGCTAGATCCTGATAAGCAATATGTAACTAAAACTCAAAGAGATTTCATTGTTAAATATCGTGACGTCATTGAACAAATCAATACAAAGCGATGTCTTTGTTGTGATCGGGAATACCCGCGAAGAAAGGCGGTCATACAACATTTACAGAAAAACGGACACAAGGTCCCGAAACACACGTGCTATAATTGCGTCATTACTTTTGGCCATATCGGCGCCCTACTTAGTCATATGAGGGCGGATTGCTGTACTCATCTATGGAAAATTATATACAACGAAAATGGAATAACCGACGATATGATTATCGAAGGTGAACCGAAAGAATCGAAAGAAGTTCAATATAAGGATATTTTCAATGCAAGGTCATACGCTTGTAAACTATGTCCGGCTAAGTTCCGGCTGAAGCAATTTATTTTAAAGCATGTTTTGGATGTTCACGAAGATGGCCAGTCTGCAGTAATTATGGCTTGTGTACATTGCGGGGCTCGTTTTAAGGATAGGGGTGTGTGGAAGAAACATATTCGCAATGGCGAATGCACAGTCTATATTTCTTGCGATTTATGCCCTGAAAAGTTTGCAAACGTACAAAGTTTCAATAACCACGCGTTAGCGGTACACGCCGGTACTTTCGACCCTGAAAACCAAACTAAATGTGTGGATGGTCGTCCAACCGACTGTCCTATATGCGAAAAGAAAAACGCTACTTACCAAAACCTGATCAAACATCTTAAATTATGCCACAACGAAGACAAACCCCATTACTGTCAAAACTGTGATGCTAAATTTGAAAAGACAGATGATCTGAATAAGCATATATACATGGAGCATTCTGATAAAGCGATGGGTATCTCCGTGAAGGAAGAAAGTGTCGATATGTCGATCGTGAAAGAGGAAGCTGAAGAATATCATTATTCTTGTACAGAATGCAACGCTATATTTGAAACCGTTGACGCATGGACGGATCATCAAGTTGCTGAGCATAACCAAGTGGCTCACCATTGTGACCAATGCGAAAAGAAATTCTTAAGGCCGTCAGAACTAGCAGAACATAAAAATACACATTTGAGAGTAAAATTATATCCTTGTAGTATTTGCTCAGATTCGTACAGCACTCCCCAAAAGTTATCTGACCATGTCCAAGTAGCTCATCCAGGAGCTTCGGTTTCTGCTGCGGGAGAAACTGAATTCTTTTGCGAAATTTGTATAAGATCCTTTAAAAGCCGCCAAGCTTATTCCAACCATATGCGTATTCATGCAAAAATTCCGACTACTAACAGAAAGCCAGCTGATCCAAAGAGTTTCGCTCCCCAAATCATCGGAAAACCTATAAAACAATTCCCTATCATGCCAGGAAATCTACAATTTAAGACGAATCTAATCGTTCCTAATGCACCTTATTCTTGTGATATTTGTGGGAAAGGTTTTATGCATAAGAAGAATATTTGGAAACATAAAAAAGTTCTACATGCCGATCTTGTGAATGATAGGAATGACAGCGAGGAAAACACCATGCACGCTTCCACAGAAGAAGATGACTATAACATTGATGAAAACGGCTCGATACTGTCGACTCCTCAATTTGATAGCTTCAACTTCAGTAGCTACAGTAATAATTCACAGACACCGACTCAACCAAAAAAGAAAAAGGAGCAACAAGTTGGAAGCTTTGCTTGTGATTTGTGTTACAAGAAGTTCCCGCTCAGAACTAGCTTATGGAAACATAAACGTGCTAAACACGGCATTATAAACGCAAGTACACACGGCAGCGCAGAAACACAAACCCAAATTCAAAATCAAGCAGCAGTGACAGTAGCGGCTGCAACGCCCCCTGCCTCAGGAGACGGTAGTAGATCCAGTTGCACAATCTGCAAGATCTCATTCGCGGACAAGAAATCCTACTACAGACATAGAAAAAACGTACACAAATCCACATCACAAGTCTGCAAAATCTGTGGAATACCTCTTAACTCAACCTTGGAACTGTATGAGCATTTGAGAGCAGCCCATGCCAGAGAACTCCTCGGTTTCAATGCCAGTCAAGGCTCTAGTAATATCAAACAGGATATTTCGGGACAAGAATTGGATGCAGATTACGAAGGGGAGCAGGAAACGACTGATCCGAGCGCGGACTATCAAGCTCGGTATCCTTGCGATACTTGTGGAAAACAGTTTGTTGGCCTATTGGCGTTACAGAACCATCAATGCATTAACCAGCTTTCTACAGACCCTCAGTCGTTTAATTGTGAAATTTGCCATAAGAGTTACTCGTCAATTGCTGCGTTGAAGAGTCACCGTGGTTGGCACCTACGATCTCCTGATGGTAAAGCGGCTGCCAATAATAGTGGTCTCTGGATGCCTCAACATAAAGTGACGAATAAAGTCAGCAAGCACGAAATTGTTGACGCCATTCAATTGGCTAAAGTGACTCATTCGGCGCCAGCCGCTTCTGTCATGAAAAGGAGATTACCACCAGAAGTTGAAGTGACTGTTGTGAATCCTAACAAAAAAATGCGATCTGATGACTCCGTCGAAATGGAACAAAGCATGACAGGTGCGTTAGAGGATCGGTACTGTACAATATGCGATAAAGAGTTTACGAAACGCGCTGCCTTCCAAAGACACATGGATGAAGTTCACCAACCGAACTCCGTATTTTGCCCCGTCTGCGATAAAAGCTTTACGAGAAAATCTACGCTCTTGGTCCATATGAGGAAGCATTACGAAGGCGGCGAAGGTTCCTCAACGACAGCCCAAGAAGATGATACATACGGTTGTGATCTCTGCGGGGCGCAGTACCAAAGCGCGAATGCCCTGACCATGCATCGAGTGAAGCATCACGGAGAACAATTAGAAGATTCCGAAGATGAAGGCAACGTAAGCGCGGCTCCTCCAGGCGAGTTCACTTGCAACCAATGCGGTGACGGCGTTGCGACGCCGAGAGACCTTATTGCCCACCGAACCATGCACGCTACGGCCTCTAAATATTTCTGCACGATTTGCAAGGTATACTTCGCTAGATCGTTAGATTTGTCGGCCCATACTAAAGCTAGGCACGCGAATGATGAGGATAAAGTTTTCTTCCCTTGTGCGATGTGCGATAGATTTTACATGAATAAAAAGAGTTTGCAAAGACATATAGAAATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGDLLPIFPTTSSDGREPPVLASKIKDCVSVQINENDDLPTCVCRKCVDNVNNWHIFKKVCERTQIKLQTLVKKDASQLEEVKIKSEPLSDEAYDDGVVIHASYPGIEQNASSSHKVQPEGPPILASLGLTPRSDKNCVDPRMDWQRVHAILDLVQDDEVIDSLQSIEESDVLQHSDHDSDTEVELMSDIDDEYIDCKNGYRCKDKTVLSKDPKTSRFNINAKIKQSIQLRKRKAADIKHCPRPQHAWQLLFTDDMLELIVESTNENILRRRHGYSLSTSIEEIKAFIGILYLHGIMRPTHQKRSDLWHEKYGISSVRCSMKQDRFKFIVKNICFDKNDDDDGMLQYDTMKRMRKIFEIFAMNCRTVYDIENVGVIDEVIVPVYGPCPFRYNIDKKPMKKGIKLVLLVDPNNFFVSNLDVIIDPYFGPEEIVKKLVQHLAGSGKTVVMDSWYTSCTLMETLKNEFGLYSIAALNPKDEVIPPMFLSRLRKCRTFMTGFLDNDTSLTSYVTTGAKSVNVLSNHPKFYKRGHANHTTPVSMYKKNQSAVEVVDVLMHYYTTMQCSNDWTLSLFYTLLNIASVNAQVLWSMQCSTNVQKRRLFIRDLAFGLIANEFKVEDIRPSLIDPSKKLCMDKGLLNFQGPDGRKRCNGHEDEEEEYEGELNENTHFPKVPNMPEVSITVMRPTGETLQSRQGIQEIASKNCLVCDRAYRYSHNARRHELTSHGFDRYTNKVTNTKKSKSKKSHMLPKLRPNPFNPKARLMPNPISHKLKMQMLPSLSQQHQPMHSKRVPHKVIPKPVPVKTLPPKAHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGAESPETLISEPEIASFQVEAILTEPDAFDQQPEEDEDEMDGEIHNNQSAYDTVDMESDNEIEIAREQENDTNEQQNDEQEEEHDQGVVINDNDNEQGVDHEQIEDHELEGEHEHDQERMSDNENHAEESQVNENPEENHEETVEDHEDGEIYDGDHSEQRIEDDYEIKEDDNDGLDHYQDAQDNQEENEDDIDEEEEMAPSLAPVVEISEDIQNNSVDNSEHNDEDELNEEELDETAEANDNIIDGEQTVLDPDKQYVTKTQRDFIVKYRDVIEQINTKRCLCCDREYPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRADCCTHLWKIIYNENGITDDMIIEGEPKESKEVQYKDIFNARSYACKLCPAKFRLKQFILKHVLDVHEDGQSAVIMACVHCGARFKDRGVWKKHIRNGECTVYISCDLCPEKFANVQSFNNHALAVHAGTFDPENQTKCVDGRPTDCPICEKKNATYQNLIKHLKLCHNEDKPHYCQNCDAKFEKTDDLNKHIYMEHSDKAMGISVKEESVDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKLYPCSICSDSYSTPQKLSDHVQVAHPGASVSAAGETEFFCEICIRSFKSRQAYSNHMRIHAKIPTTNRKPADPKSFAPQIIGKPIKQFPIMPGNLQFKTNLIVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNDRNDSEENTMHASTEEDDYNIDENGSILSTPQFDSFNFSSYSNNSQTPTQPKKKKEQQVGSFACDLCYKKFPLRTSLWKHKRAKHGIINASTHGSAETQTQIQNQAAVTVAAATPPASGDGSRSSCTICKISFADKKSYYRHRKNVHKSTSQVCKICGIPLNSTLELYEHLRAAHARELLGFNASQGSSNIKQDISGQELDADYEGEQETTDPSADYQARYPCDTCGKQFVGLLALQNHQCINQLSTDPQSFNCEICHKSYSSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTNKVSKHEIVDAIQLAKVTHSAPAASVMKRRLPPEVEVTVVNPNKKMRSDDSVEMEQSMTGALEDRYCTICDKEFTKRAAFQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMRKHYEGGEGSSTTAQEDDTYGCDLCGAQYQSANALTMHRVKHHGEQLEDSEDEGNVSAAPPGEFTCNQCGDGVATPRDLIAHRTMHATASKYFCTICKVYFARSLDLSAHTKARHANDEDKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -