Yseq034031.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010001669.1:78158-89686[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0043 0.41 12.3 1.4 1 23 149 172 149 172 0.97 2 13 0.91 86 5.0 6.2 6 23 185 202 183 202 0.94 3 13 6.2e-05 0.0059 18.1 0.2 1 23 208 231 208 231 0.95 4 13 0.0011 0.1 14.2 1.8 1 23 265 287 265 287 0.96 5 13 6.2e-05 0.0059 18.1 2.2 3 23 296 316 294 316 0.95 6 13 1.7e-05 0.0016 19.9 0.5 1 23 322 344 322 344 0.99 7 13 2e-06 0.00019 22.9 1.7 1 23 352 374 352 374 0.99 8 13 9.9e-07 9.4e-05 23.8 1.0 1 23 380 402 380 402 0.96 9 13 1e-05 0.00095 20.6 0.3 1 23 408 430 408 430 0.97 10 13 4.4e-05 0.0042 18.6 1.7 2 23 437 458 436 458 0.96 11 13 0.0041 0.38 12.4 4.7 1 23 464 486 464 486 0.97 12 13 2.3e-06 0.00021 22.7 0.6 1 23 492 514 492 514 0.99 13 13 0.00043 0.041 15.5 2.2 1 23 520 542 520 542 0.97
Sequence Information
- Coding Sequence
- ATGGCAGATCATGGCGACATAGAAGAGCTTGATTCTTGTTGCAGGACTTGCATGGCGTCGTCCGTGGAGATGTTCGATCTATTTTCCACGTACAACGACGTTGTTATCGCTGATTTACTATATTCCAGCACTTCAGTAAAGGTTGATAAAGATGACTGCTTACCTACAAAAGTATGTAACATTTGTTACAGCAAACTGACAGCCTTTTCAGACTACATAAAACAGGCTAAAGATGCTGATTCAAGATTAAGAGATCTGAGACTGATAAAGAAGATCGGTGAAAAAGAAATTAAAGTTAAATTAGAATTAGAATTTAAAAACATAAATGACAATGAAACAGATATCGATCAAAATTTAGATTTTGAATACAATAGCCCTGATGATAACATAAAAGTAGAAACCGTAGAAGTAACTCAATCTCCCAAAACAGAAAAGGACAGAAAATTCAGTTGCAGTGTTTGTTTTGAAATATTTAATAAGTTGAAATACTTGAGAGATCACACTAAAAGTGTACATCCCGACTTAAAATTGAAGGCAGAATTCGAATGTTTTTGTGGAAAAACATTTAAACACCACAACAAATATCTTAGACATTCATTAATACATAACAAGAATAGACCATTCCCATGTGTTTTTTGTCCAGAAAGCTTTAAAAAGCAATCACTCTTGACTAGCCATTTAATAATAGAACATAATCAAACGGAAACTAAACCTGATATCCTTTGTGAAATCAACCAAACAACACCAACAGAAACTACAGTAAAAATAATCAAGACAGAACAATGCGACTCATATTTATGTGACAAATGTTCAGCTTCGTTTGATTCTTCGCATTCTTTGGCAGCTCATAAAAAGAAGCACACAAAATCGGGCAGAATCCTTGCCTGCTCCATATGCAGTAAGCAATTTAAAAAGCTAAGTCATTTGAAAAGACATGAGCTTATTCACGATGTTAATAGACCGTTCAAATGTTCCTTATGCCCGAAACGCTATGTTAAAGAGGATGATTTGCTGGTACATATGAATAGACACAAAGGCATTACGAAAGGGCCATATAAATGCTCAATTTGTTCCAAAGAGTTTGGTCAAAAGTCAACTTTAACGTCTCATGTGAAAACACATACGGGGGAAAAGCCATATTTGTGTCCAACTTGTGGAAAACGGTTTGATGCAAACAACAATTTGAAGCAACACATGAGAAGGCATATTGGAGAGAAGAACTTTGCTTGTAGTTTATGTCCGAAAAAGTTTGTTAGTAAAGGCGAGATGCAATCCCACATGATCACACACACCGGTCACCGAGCGTGGACTTGTGATCAGTGCGGCCAGTCCTTCACCAAGTCCACGTCCCTGAGTAAACACAAGCTGAGGCATTTGGGCATCAGACCGTATGAGTGCGACGCTTGTTGTATGAAATTCTCAGACAAAGGCCATTTGAAGCGTCACTACCGCATCCACACGGGAGAGAAGCCGTATAAATGCGACTTGTGCGATCGTGCCTTCGCGCAGAGCAACGATCTCGTCAAACACAAGCGGTCCCATCTTGGAGACAAGCTGTACAAATGCACCCAGTGTCCTGAAGGTTTCCGCTTGAAGACAGAACTGACCCAGCATTTATCACACCACTATCTAGCCAATAAACTTGATGAGGTACCGGAATCCAGTGAAAAGGTTACCAAGAAGATCAAAGGAGAAAGTGTAATTAAAGATACGAGTAAAAGTGGTAGTGTGAATGAAACAGCGCATAAAGTTAAGGTTTGA
- Protein Sequence
- MADHGDIEELDSCCRTCMASSVEMFDLFSTYNDVVIADLLYSSTSVKVDKDDCLPTKVCNICYSKLTAFSDYIKQAKDADSRLRDLRLIKKIGEKEIKVKLELEFKNINDNETDIDQNLDFEYNSPDDNIKVETVEVTQSPKTEKDRKFSCSVCFEIFNKLKYLRDHTKSVHPDLKLKAEFECFCGKTFKHHNKYLRHSLIHNKNRPFPCVFCPESFKKQSLLTSHLIIEHNQTETKPDILCEINQTTPTETTVKIIKTEQCDSYLCDKCSASFDSSHSLAAHKKKHTKSGRILACSICSKQFKKLSHLKRHELIHDVNRPFKCSLCPKRYVKEDDLLVHMNRHKGITKGPYKCSICSKEFGQKSTLTSHVKTHTGEKPYLCPTCGKRFDANNNLKQHMRRHIGEKNFACSLCPKKFVSKGEMQSHMITHTGHRAWTCDQCGQSFTKSTSLSKHKLRHLGIRPYECDACCMKFSDKGHLKRHYRIHTGEKPYKCDLCDRAFAQSNDLVKHKRSHLGDKLYKCTQCPEGFRLKTELTQHLSHHYLANKLDEVPESSEKVTKKIKGESVIKDTSKSGSVNETAHKVKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -