Basic Information

Insect: Ypsolopha sequella
Gene Symbol: -
Assembly: GCA_934041175.1
Location: CAKOGU010000015.1:640619-646885[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.0099 0.94 11.2 0.6 1 23 21 44 21 44 0.94

2 28 2.4 2.3e+02 3.7 2.9 1 23 44 67 44 67 0.95

3 28 1.7 1.6e+02 4.2 1.4 1 21 94 114 94 117 0.74

4 28 0.7 66 5.4 1.0 1 23 117 140 117 140 0.96

5 28 0.62 59 5.5 2.7 1 23 159 182 159 182 0.91

6 28 0.052 4.9 8.9 1.2 1 23 234 257 234 257 0.94

7 28 0.08 7.6 8.3 0.6 1 23 257 280 257 280 0.97

8 28 0.0065 0.62 11.8 0.4 1 20 290 309 290 313 0.93

9 28 0.068 6.5 8.6 2.9 2 23 317 339 317 339 0.95

10 28 0.001 0.097 14.3 0.9 2 23 344 366 343 366 0.96

11 28 0.00026 0.024 16.2 1.9 2 23 373 394 372 394 0.97

12 28 2.5e-05 0.0024 19.4 0.2 1 23 400 422 400 422 0.97

13 28 0.046 4.4 9.1 0.3 1 23 456 479 456 479 0.93

14 28 0.0031 0.29 12.8 0.2 3 23 481 502 479 502 0.94

15 28 0.0078 0.74 11.5 3.5 1 23 517 540 517 540 0.98

16 28 0.041 3.9 9.3 2.1 2 23 544 566 544 566 0.94

17 28 9.9 9.3e+02 1.8 1.4 1 23 571 594 571 594 0.91

18 28 0.00045 0.043 15.4 0.2 1 23 600 622 600 622 0.98

19 28 6.7e-05 0.0064 18.0 1.6 1 23 628 650 628 650 0.98

20 28 8.4e-06 0.00079 20.9 2.3 2 23 657 679 656 679 0.96

21 28 0.03 2.8 9.7 0.1 3 23 707 728 705 728 0.94

22 28 0.0062 0.59 11.8 0.0 3 23 730 751 728 751 0.95

23 28 0.23 22 6.9 3.8 2 23 766 788 765 788 0.97

24 28 0.0016 0.15 13.7 1.7 1 23 793 816 793 816 0.94

25 28 0.033 3.1 9.6 0.7 1 23 821 844 821 844 0.94

26 28 0.074 7 8.5 0.3 2 23 851 872 850 872 0.96

27 28 0.00024 0.023 16.3 1.2 1 23 878 900 878 900 0.97

28 28 0.0013 0.12 14.0 2.6 2 23 907 929 906 929 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.0099	0.94	11.2	0.6	1	23	21	44	21	44	0.94
2	28	2.4	2.3e+02	3.7	2.9	1	23	44	67	44	67	0.95
3	28	1.7	1.6e+02	4.2	1.4	1	21	94	114	94	117	0.74
4	28	0.7	66	5.4	1.0	1	23	117	140	117	140	0.96
5	28	0.62	59	5.5	2.7	1	23	159	182	159	182	0.91
6	28	0.052	4.9	8.9	1.2	1	23	234	257	234	257	0.94
7	28	0.08	7.6	8.3	0.6	1	23	257	280	257	280	0.97
8	28	0.0065	0.62	11.8	0.4	1	20	290	309	290	313	0.93
9	28	0.068	6.5	8.6	2.9	2	23	317	339	317	339	0.95
10	28	0.001	0.097	14.3	0.9	2	23	344	366	343	366	0.96
11	28	0.00026	0.024	16.2	1.9	2	23	373	394	372	394	0.97
12	28	2.5e-05	0.0024	19.4	0.2	1	23	400	422	400	422	0.97
13	28	0.046	4.4	9.1	0.3	1	23	456	479	456	479	0.93
14	28	0.0031	0.29	12.8	0.2	3	23	481	502	479	502	0.94
15	28	0.0078	0.74	11.5	3.5	1	23	517	540	517	540	0.98
16	28	0.041	3.9	9.3	2.1	2	23	544	566	544	566	0.94
17	28	9.9	9.3e+02	1.8	1.4	1	23	571	594	571	594	0.91
18	28	0.00045	0.043	15.4	0.2	1	23	600	622	600	622	0.98
19	28	6.7e-05	0.0064	18.0	1.6	1	23	628	650	628	650	0.98
20	28	8.4e-06	0.00079	20.9	2.3	2	23	657	679	656	679	0.96
21	28	0.03	2.8	9.7	0.1	3	23	707	728	705	728	0.94
22	28	0.0062	0.59	11.8	0.0	3	23	730	751	728	751	0.95
23	28	0.23	22	6.9	3.8	2	23	766	788	765	788	0.97
24	28	0.0016	0.15	13.7	1.7	1	23	793	816	793	816	0.94
25	28	0.033	3.1	9.6	0.7	1	23	821	844	821	844	0.94
26	28	0.074	7	8.5	0.3	2	23	851	872	850	872	0.96
27	28	0.00024	0.023	16.3	1.2	1	23	878	900	878	900	0.97
28	28	0.0013	0.12	14.0	2.6	2	23	907	929	906	929	0.96

Sequence Information

Coding Sequence: ATGGACATAGAAGTAACCCGTGGCATGTTCAAGACACTTGAAGAGAACGGTCACAAAATCTTCTCTTGCAACCATTGCAATGCAAAGGTGAAGACAGTATCAGGTTTACAACTCCACATTACTCAAACACACCAGTGCCCTTGCTGTTCCCAATTCTTTGAGACGAAGATGGAGAGAACGGCACATTTAGAATCTCTTCACAGCTACGTAGAGAAGAATTCGGAAGACATAAACTACAAAAGCATGTTTAAAATTGACAAGAGCGAAAAAAAGAGAACTTTTTCCTGTAATTATTGCGATAAGAAGATGAAATCCTTATTAGGCGCCAAGCTGCACATAGCCAATAAGCACCAATGCCCTTGCTGCCCTCTTTATTTCGAAACAAAGCCCAATAAAATCGATCATTTGAAATCGGTCCACAACTGCGTGGAATCGAAGCTGCTGAAAATGGTAGTTGAAAAGGACAACCTAAAGTATTCTTGCAAGCATTGCGATGTAAAAATGAAAACATTACATGGGTTAAAACTTCACGAGACGAATATACACAAATGCACTTTCTGTTGTGAAATTTTCAATACAAAGATGGAAAAAAGTGAACACTCGAAGACAGTACATGATTATGTCGAGCAGAAAGCTGTTACATCGGAATTGGAATGGGACCAAATGTTCACGGTGCTAGAAGAGGACAACAGTAAGAGTTACACATGCAACTACTGCTTTGTGAAAACCAACTCTGCAAGGAGTTTCCAGCAGCACCTTGCCCTAATACACCAGTGCCCATCCTGCTCCCAATTTTACGAGACAAAAGCGGAAAAAATTGAACATTTAAAATCAGTCCATGACTACGTAGAGAAAGAATCTGAAGAATTTGAATGTGAAGTTTGCATGAAAGTTTATGACTCGAAGATAAATCTGAAACGTCACAGATGGACCATGCACAAAACACCGAAGTGTCTCCGGTGTAACATCACCTTCTCAACTCGGACCGAGATGCATGCGCACAAGAAATTAGTACACGGACAAAAACTAAAATGTGGAATTTGTAATTACGAAACATTCAGGAGATACGAATTGGAGAGCCATCAAAGACGCCTCCATTTGCAGGAGAAGAATGTTAAGTGCGAATTTTGCGAGAAGATGTTTTATGATAAGCGAAGATTGACTAGGCACATGGTAAAACACAGCGCGGAAAAGTTATTCGCGTGCACGTTTTGCAGTAAAGTTTTCGCAAGGAAGGAGGCATTGTCGGTCCACGTGAGGATCCACACAGGAGACAAGAGGAATGTCTGCTGGATTTGTCAGTGCAAGAAGAAAAATATCAGCAGCGACCACTACAAGATTGTGAAAGAAGACGGACGGACAAAGTTTTACTGCAACATCTGCGGAACGCAAAGGAGAGATTTGCTCTCCCTCAAGTCTCACGTCATCAACATTCACCTTTGTACTTACTGTGACGCAGTTACTCCAAATAAATATTTACTAACTGAACATTTGAAACTCGGTCATGGGCATGTAGGGAAGAAACCGGAAGTAACGACCTCGGAAACGTTTAAATGCGAGGTGTGCTCCAAAGAATTTCAACGTATAACATGTTATAAGGATCATTTAAGGAGGGCGCACCGACGGCCGACCTGCAAACAATGTAACATCACTTTCGAGATTAAAGGATTATTGCTTAAGCACCAACATGAGAAACATGGACTACAAAAGCACAAGTGTGGCGTGTGCGAATTTGAATCGTTTAGTAAATTATATATATTGGACCACCAAAGGCGCGTGCATATGAAGGAGAAAAATTTTAAATGTGAGATATGTGGAACGATGGTCTACAATATGGCTCTACTAAGGTTGCACATGATAAAGCACAAAAAGGAGAAGAAGTTTTCCTGTTCGTATTGCAAGAAGGTGTTCACAAGGAGGGAGACAGTGATGATGCACGAGAGGATCCACACGGGAGACAAGAGGAAGGTGTGCAAGATATGCAAGGAGGCGTTCGTCCAGAAATCCAGCTTGACCCATCACATGATGAAGTATCATCCTGGAAGTGAGTGCGAGAACAGAAATATCAGCAGCGATCTCTACAAGATTGTCGAACGAAACGGACGGAAAACTCTTTTCTGCGATGTCTGCGAAGCCCAGTTCAAGATAATGTCGAACTTGAAGTCTCACATCATCAATAAGCATCTATGCAATTACTGCGATGCAATAATACCCACAAAGGATCTTTTAAATGAACATCTGAGAGTCGGTCACAAACTAAACGATGGCGTCGAGAAACCCGCAGGTCAAAAGACGAAATGTGAAGTGTGCTCTAAAGAATTCGAATGCAAAAGAACTTTCTATAATCACATTCGAAAGGCACATAAACCGAAATCTTATAGATGCGTTACATGTAATCTCAATTTCAAAAACGAGGGTAAATTGAATCGACACCAGTATGAAAAGCACGGCAAGCAAAAATATAAGTGCGGCGTCTGTGGATATGAAACATTTAGTAAGAGTTATTCTCTGGCACACCAGAGACGTGTTCATTTGAAGGAGAAGAATGTGAAATGTGATACTTGCGGAATGATGTTCTATGACACAAATATCTTGAAGCTACATTTGATAAAGCACAAACAAGAGAAGAAATTTGCGTGTAGATACTGCAAGAAGGTCTTCACAAGGAGGGAGACAGTGATGATGCACGAGAGGATCCACACGGGGGACAAGAGGAAGGTGTGCAAGATTTGCAAGGAAGCGTTCGTTCAGAAATCTAGCTTGAATTGTCACATGATGAAGTATCATCCTAATTGTGCTTGA
Protein Sequence: MDIEVTRGMFKTLEENGHKIFSCNHCNAKVKTVSGLQLHITQTHQCPCCSQFFETKMERTAHLESLHSYVEKNSEDINYKSMFKIDKSEKKRTFSCNYCDKKMKSLLGAKLHIANKHQCPCCPLYFETKPNKIDHLKSVHNCVESKLLKMVVEKDNLKYSCKHCDVKMKTLHGLKLHETNIHKCTFCCEIFNTKMEKSEHSKTVHDYVEQKAVTSELEWDQMFTVLEEDNSKSYTCNYCFVKTNSARSFQQHLALIHQCPSCSQFYETKAEKIEHLKSVHDYVEKESEEFECEVCMKVYDSKINLKRHRWTMHKTPKCLRCNITFSTRTEMHAHKKLVHGQKLKCGICNYETFRRYELESHQRRLHLQEKNVKCEFCEKMFYDKRRLTRHMVKHSAEKLFACTFCSKVFARKEALSVHVRIHTGDKRNVCWICQCKKKNISSDHYKIVKEDGRTKFYCNICGTQRRDLLSLKSHVINIHLCTYCDAVTPNKYLLTEHLKLGHGHVGKKPEVTTSETFKCEVCSKEFQRITCYKDHLRRAHRRPTCKQCNITFEIKGLLLKHQHEKHGLQKHKCGVCEFESFSKLYILDHQRRVHMKEKNFKCEICGTMVYNMALLRLHMIKHKKEKKFSCSYCKKVFTRRETVMMHERIHTGDKRKVCKICKEAFVQKSSLTHHMMKYHPGSECENRNISSDLYKIVERNGRKTLFCDVCEAQFKIMSNLKSHIINKHLCNYCDAIIPTKDLLNEHLRVGHKLNDGVEKPAGQKTKCEVCSKEFECKRTFYNHIRKAHKPKSYRCVTCNLNFKNEGKLNRHQYEKHGKQKYKCGVCGYETFSKSYSLAHQRRVHLKEKNVKCDTCGMMFYDTNILKLHLIKHKQEKKFACRYCKKVFTRRETVMMHERIHTGDKRKVCKICKEAFVQKSSLNCHMMKYHPNCA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -