Yseq027608.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010001070.1:63663-65324[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.9e-06 0.00094 20.6 2.0 2 23 87 109 86 109 0.94 2 14 0.00013 0.012 17.1 1.0 2 23 117 139 116 139 0.96 3 14 2.6e-05 0.0024 19.3 1.5 2 23 147 169 146 169 0.92 4 14 8e-07 7.6e-05 24.1 1.7 2 23 177 199 176 199 0.95 5 14 0.00026 0.025 16.2 0.5 2 23 207 229 206 229 0.95 6 14 0.0033 0.31 12.7 0.7 1 23 236 259 236 259 0.95 7 14 0.00027 0.025 16.1 0.6 2 23 267 289 266 289 0.96 8 14 4e-06 0.00038 21.9 0.3 3 23 306 327 304 327 0.95 9 14 0.00056 0.053 15.1 1.7 2 23 335 357 335 357 0.97 10 14 1.1e-05 0.0011 20.5 0.5 2 23 363 385 363 385 0.97 11 14 0.0052 0.5 12.1 4.4 2 23 393 415 392 415 0.97 12 14 0.0033 0.31 12.7 6.0 2 23 422 443 421 443 0.96 13 14 5e-05 0.0047 18.4 3.6 1 23 449 472 449 472 0.98 14 14 0.036 3.4 9.4 0.1 2 21 508 527 507 528 0.92
Sequence Information
- Coding Sequence
- ATGGATCAAATTACTATAGAGGAGGTGATCATAAAATCTGAAATTGAAGAAACTAATAGTCAATCAACAGATCCATCAACTGATTTTAAAAATGAAACTGTAAAAAACGAGGATCCAAATGAAGATTTTAATTTTAGGCAAGAAGGTACTCAAGTGTTTTCAACTTTGGATGATGACAAAGATTTAACATTCCTAAATAAAGATAACTCCATAAAAATAACAGGGAAAGTTTATGAAAACGGTAAAATTAACAGAGTGTCGTGTCCCCAGTGTGACCATACTTTCAAGAACAGAGCCAACTTGAAAAATCATTTAAAGTTTGTTCATTCCACATTAAACGATGTGGTTGAGTGTGAGCAATGTTTCAGGAGTTTCAAATCAATCGCCCATTTACGTTCCCACATCAACTCTGTCCACGCTGACACTGAAAGCGAACTCTCTTGCGAAATCTGTGATAAAAAATTCCCAAACAAGAAGAAATTGAAGAACCACATCTTTTACTCCCATCCGGAGCCACAGGAGAGTGTCAGCTGTGACAAATGCTCCAAAACATTCAAAAGTAAATACAACTTAAAAGTCCACCAAAGACTCGTACATCCCTCAGAAGATAGTTCCGTAGAATGCCCACAGTGCAACAAGAAGTTTAAAGTAGACATGCTACTTCAGAGACATCTCAAATGGAGTCATCCAAACGATGGCATGACTTACAAATGTCAGGAATGCGGTCGAGTACTACCATCCATAGCTTGTTACAAGAAACACTTAGAAAATGTTCACAAAGGTATGGAGGAGCTTATCATGTGTGAGATATGCCAGAAACTATTTAAAACAGTAAATAATTTACGAATACACACAAAAAGGGTCCACAGCGATGAGAAATTTGAAGTCAAAGAGTACAAAGTTGGAGATCTAGCTTGCAGTGAATGTGATAAACGGTTTTCCACTAACACTGCTTTACAATGGCACATAGAACGAAACCATTCAGATAATAAACGGGATAATACTTGTACAATATGCTCCAAAGAGTTGACAGATTACGCATGTTTGAAGCGGCATATGATGAGTGTACATATTACAAAACAGGCAACTTGCTTTATCTGCCAAAAAGATTTTAAGTCTCCGATGGCATTACAAAGACATATCCGAGTGACTCACGCGCCGCCTGAAGCTGCACAAACTTGTGACATATGTCAAAAAACTTTCAAGTGCTCCATGCATTTGAGGATACACGTGAACACTGTGCACCCGAAACATGGTACCTGTGAATGTGACATATGTCATAAAGAGTTTGGTTCTCGAAAGTACATGCTGAAACACAGGAAAACTCATGTTTCTGAACGAGACTACCAGTGTCACATTTGTCAAAAGATGTACAGAAGTACTGAAGATGTGAAAAAGCATCAGAAAAGAGTCCACAATAAGCCAAATATTGATATTCCAATAAGCCAACCAATTTTTTCTACTGAAAATGCGTTATATCAAACTATTATACCCAATGAAATATGTGATACAAGCATGCTAAGTTGTGTGAAATGTGGACAAATGTTTGTAAGAGATTTAGATCTCCATGCTCACATACTGAATTGTGGCACAAGTGAAGAGCAGAGGGAGCCACTTGACTTAGTGAAGGTTGAAATTTGTTTAGAAGCAGATGACAGTTAG
- Protein Sequence
- MDQITIEEVIIKSEIEETNSQSTDPSTDFKNETVKNEDPNEDFNFRQEGTQVFSTLDDDKDLTFLNKDNSIKITGKVYENGKINRVSCPQCDHTFKNRANLKNHLKFVHSTLNDVVECEQCFRSFKSIAHLRSHINSVHADTESELSCEICDKKFPNKKKLKNHIFYSHPEPQESVSCDKCSKTFKSKYNLKVHQRLVHPSEDSSVECPQCNKKFKVDMLLQRHLKWSHPNDGMTYKCQECGRVLPSIACYKKHLENVHKGMEELIMCEICQKLFKTVNNLRIHTKRVHSDEKFEVKEYKVGDLACSECDKRFSTNTALQWHIERNHSDNKRDNTCTICSKELTDYACLKRHMMSVHITKQATCFICQKDFKSPMALQRHIRVTHAPPEAAQTCDICQKTFKCSMHLRIHVNTVHPKHGTCECDICHKEFGSRKYMLKHRKTHVSERDYQCHICQKMYRSTEDVKKHQKRVHNKPNIDIPISQPIFSTENALYQTIIPNEICDTSMLSCVKCGQMFVRDLDLHAHILNCGTSEEQREPLDLVKVEICLEADDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -