Basic Information

Insect: Ypsolopha sequella
Gene Symbol: -
Assembly: GCA_934041175.1
Location: CAKOGU010000429.1:684474-693312[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.3e-07 5e-05 24.7 0.8 1 23 209 231 209 231 0.98

2 14 0.0012 0.11 14.1 0.7 1 23 237 260 237 260 0.94

3 14 0.0052 0.49 12.1 0.2 1 23 266 288 266 288 0.97

4 14 3.8e-07 3.6e-05 25.1 1.1 1 23 294 316 294 316 0.97

5 14 2.9e-05 0.0028 19.1 1.9 1 23 322 344 322 344 0.96

6 14 5e-06 0.00047 21.6 0.7 1 23 350 373 350 373 0.95

7 14 1.2e-05 0.0011 20.4 2.2 1 23 379 401 379 401 0.98

8 14 2.7e-05 0.0025 19.3 0.3 1 23 407 429 407 429 0.98

9 14 6.9e-05 0.0065 18.0 0.8 1 23 435 457 435 457 0.99

10 14 1e-07 9.4e-06 26.9 1.2 1 23 463 485 463 485 0.98

11 14 5.1e-06 0.00049 21.5 0.8 1 23 491 513 491 513 0.98

12 14 0.084 7.9 8.3 2.9 1 23 519 538 519 538 0.95

13 14 3.5e-07 3.4e-05 25.2 2.8 1 23 544 566 544 566 0.98

14 14 8.9e-05 0.0084 17.6 2.1 1 23 572 594 572 594 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.3e-07	5e-05	24.7	0.8	1	23	209	231	209	231	0.98
2	14	0.0012	0.11	14.1	0.7	1	23	237	260	237	260	0.94
3	14	0.0052	0.49	12.1	0.2	1	23	266	288	266	288	0.97
4	14	3.8e-07	3.6e-05	25.1	1.1	1	23	294	316	294	316	0.97
5	14	2.9e-05	0.0028	19.1	1.9	1	23	322	344	322	344	0.96
6	14	5e-06	0.00047	21.6	0.7	1	23	350	373	350	373	0.95
7	14	1.2e-05	0.0011	20.4	2.2	1	23	379	401	379	401	0.98
8	14	2.7e-05	0.0025	19.3	0.3	1	23	407	429	407	429	0.98
9	14	6.9e-05	0.0065	18.0	0.8	1	23	435	457	435	457	0.99
10	14	1e-07	9.4e-06	26.9	1.2	1	23	463	485	463	485	0.98
11	14	5.1e-06	0.00049	21.5	0.8	1	23	491	513	491	513	0.98
12	14	0.084	7.9	8.3	2.9	1	23	519	538	519	538	0.95
13	14	3.5e-07	3.4e-05	25.2	2.8	1	23	544	566	544	566	0.98
14	14	8.9e-05	0.0084	17.6	2.1	1	23	572	594	572	594	0.97

Sequence Information

Coding Sequence: ATGCCTCTAAACTTTGGCTTGAAGAATGGTTTGTGTCGTTGTTGCCATGCTCGAGGCGCCTTTAAGAGTCTTGGAGCGTCATACACCTTTGACGGCAAAATTGAGATATATTCAGTTATTATCCGAGAATCTTTCAATATTATTATAGCACCCCAGTCAGGAGAGAATGGTCCATCGACGTACACTATATGTGAGTCCTGCATCATCAGTCTGCAAGATGCAGCCAGGTTCAAGCACCAAGTGTTGAGCTGTGAGGAGAAGTTTGACAAATACATAAAGGAAGGGCTACCTCTTGTCAAGCTAGAAGTTGATTTTGATACAAAGGAAAATTGTGAAGTGAAAAGTGAATCCTTGCTAGAAGACGATAGCGACAGAGAAGGCCTGGATCACAAGTATGATCAAGATGTGTATGATCAAGTCCCATCGACTCAAGATCAGATATTCAGTGACGCTGTGTCCGTGCCGCCGCGGCGTGATTCTCGTCCCAAGCGACGTTCTCCCCGCGCCTGCAGCCGCAGGGACGCGCCCAATGACGTCACTCACGTGCCGGACGCTCATTGGCCGGCTCTGGATGACGTGAGCGATGATGAAGCAGTAACGAACCACAAACAAAAAACCAAGAAATTCTCCTGCGAAGTTTGCAATAAGAAATTCTCTTATCAAGGATCTCTAGAAGCACATCTGAAGACGCACACGGAAAGCAAAGTTTACACCTGCAACATATGTCAAGACAAATTCGACAAAaacaaggatttgaacaaacacattgaagcaacgcattctgaaggagccacattcccctgtaatgtttgtaatgatgtactgaatacggctaagttactgaaaaaacatttgaaagaacatttcaacgataagtcctttaattgtaaggagtgcgggaaggaattcaaaagaaaacgcggtttgaaagagcacatgctagttcatacaagagaaaagagatttctttgtgaaatttgcaataaaggctttggacacaatcagacattaaagtcgcacatgctaacacataccggggagaggccgtatatttgtgacctttgtggccgggcgtttgctcaaaggacgcacctaacgcggcacaaactaataattcacgctagagaaaagccgtatgaatgtaaagtgtgtcggaaacaattctcgagcaaaagttacttggctatacataaaaggcagcatacaggcgaaaaacctttctcttgtgatgtatgtaagaagccttttgctgcgtacactactttaaaagtccatatgagggtgcatacaggggaaaagccgtactcgtgtagtatgtgcggaaggcaattcgcacaaatggccagttttaaactacacgaaagaactcacacgggcgaaaaaccttttagctgtaaagtttgtaaaaaacccttctctgataacggctacttgaaaatacacatgcggacgcataccggggaaaagccgtatgcgtgtgaagtttgtaaacgccaattcagagaaacggggcaactgaagcgacacatgagagttcatactggagagaagccgtatacgtgtaagatctgtaataaacaaattggtaatttatccaaacatatgagagtgcattcagatataaagccgtacaattgtaatatttgtcataaacaattttcggtaagcggtaacttgaagttgcacatgagaacgcatacgggagagaagccgtttgcatgtgaaatatgtaatagtcaatttgcgcagagtagcggattgaaaaggcacagatgtacgcatctggagaaGATGGATGGTGCTTCCATTTAA
Protein Sequence: MPLNFGLKNGLCRCCHARGAFKSLGASYTFDGKIEIYSVIIRESFNIIIAPQSGENGPSTYTICESCIISLQDAARFKHQVLSCEEKFDKYIKEGLPLVKLEVDFDTKENCEVKSESLLEDDSDREGLDHKYDQDVYDQVPSTQDQIFSDAVSVPPRRDSRPKRRSPRACSRRDAPNDVTHVPDAHWPALDDVSDDEAVTNHKQKTKKFSCEVCNKKFSYQGSLEAHLKTHTESKVYTCNICQDKFDKNKDLNKHIEATHSEGATFPCNVCNDVLNTAKLLKKHLKEHFNDKSFNCKECGKEFKRKRGLKEHMLVHTREKRFLCEICNKGFGHNQTLKSHMLTHTGERPYICDLCGRAFAQRTHLTRHKLIIHAREKPYECKVCRKQFSSKSYLAIHKRQHTGEKPFSCDVCKKPFAAYTTLKVHMRVHTGEKPYSCSMCGRQFAQMASFKLHERTHTGEKPFSCKVCKKPFSDNGYLKIHMRTHTGEKPYACEVCKRQFRETGQLKRHMRVHTGEKPYTCKICNKQIGNLSKHMRVHSDIKPYNCNICHKQFSVSGNLKLHMRTHTGEKPFACEICNSQFAQSSGLKRHRCTHLEKMDGASI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -