Yseq010244.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ypsolopha sequella
Gene Symbol
-
Assembly
GCA_934041175.1
Location
CAKOGU010000299.1:1306536-1338674[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00011 0.01 17.4 2.2 1 23 426 448 426 448 0.97
2 22 0.0055 0.52 12.0 0.6 1 20 454 473 454 476 0.94
3 22 3.9e-05 0.0037 18.8 4.6 1 23 496 518 496 518 0.98
4 22 4.9e-05 0.0047 18.5 4.6 1 23 524 546 524 546 0.99
5 22 4.9e-05 0.0046 18.5 5.3 1 23 552 574 552 574 0.97
6 22 1.9e-05 0.0018 19.8 7.1 1 23 580 602 580 602 0.97
7 22 1.8e-06 0.00017 23.0 2.0 1 23 608 630 608 630 0.98
8 22 0.00013 0.013 17.1 6.7 1 23 636 658 636 658 0.97
9 22 0.00031 0.029 15.9 5.6 1 23 664 686 664 686 0.97
10 22 6.4e-07 6.1e-05 24.4 1.9 1 23 692 714 692 714 0.98
11 22 1.3e-05 0.0012 20.3 7.7 1 23 720 742 720 742 0.98
12 22 0.00018 0.017 16.7 6.5 1 23 748 770 748 770 0.97
13 22 1.4e-05 0.0013 20.2 5.5 1 23 776 798 776 798 0.98
14 22 5.7e-06 0.00054 21.4 5.2 1 22 804 825 804 828 0.90
15 22 5.3 5e+02 2.6 1.4 11 23 824 836 823 836 0.93
16 22 1.5e-06 0.00014 23.3 7.2 1 23 842 864 842 864 0.98
17 22 2.9e-05 0.0027 19.2 7.0 1 23 870 892 870 892 0.97
18 22 1.3e-06 0.00012 23.5 6.0 1 23 898 920 898 920 0.98
19 22 7.4e-05 0.0071 17.9 7.7 1 23 926 948 926 948 0.97
20 22 9.5e-06 0.0009 20.7 3.7 1 23 954 976 954 976 0.97
21 22 0.00046 0.043 15.4 0.6 1 23 983 1005 983 1005 0.97
22 22 0.0034 0.32 12.6 3.4 1 23 1015 1037 1015 1037 0.99

Sequence Information

Coding Sequence
ATGAATCCGGAACATCACAATATGAATACGGGTGGTGGCCAGCCACCAGGAAACTCCGAGTCTCAAAACCAGAGAGCACAGTCATCTCAACAGCAGCAGCAAGTAAACTTGACGCCCACAACTTCAGCTACCGACCTAAGAGTGAATTCTGCAGCCGTTAACGTAGCTTTGTCTAGCGTCGCCAAGTACTGGGTCTTCACTAACTTATTCCCTGGCCCGATACCACAAGTGTCAGTGTATGGTCTACCCACTGGAGCCCGAATAGAGAATGGGAAACCTGTTCAGGATGCTCTTGGACAAACACACAGTATACTCAATGGAGATCCGAACATTATCCTTGGTCATCATGCAGGGGGTCAGCAGGTCACTGTGTCAGGGCCGGGGGGTCAACAGATACCTGTTACACAGATTATTGCTGCTCAACCAGGACAGAACCATGAAGCATTGGTCGCCCACAATCAGCAACAGGAGCTTCAAGCGCAACAAGGCTCCAGCAATGCACAACAACAAGTGTCTGTCAGTAATCAGGCCTCGCACCAGCAGGTACCCAACCAACGGGTCGAATTTGTACAACACCATAACATAGATATGGCTCATCATTCACAGCAGCATATAATGCAGCAACAACTGATGACTGCGACCCGACCAGATCATGCTAATCAACAGATCCAGTTAACTGTCAGTGAAGACGGCATCGTGACGGTGGTGGAGCCGGGCGGTGGGGGCGGCAAGTTGGTAGATAAAGAGGAGCTGCACGAAGCTATCAAGATGCCCACCGACCACACCCTCACCGTGCATCAGTTGCAGCAGATTGTTGGACAACAGGTAATCGACAGCGTAGTCCGCATAGAACAGGCCACTGGCGAACCAGCCAACATCCTTGTCACTCACAATCCTGACGGTACAACGTCCATAGAGGCGAGCGCCGGCGACCCCTGTATTGTCAAAGATGAGAAAAATAACTCCAAGATGGAGACTGCTCAGTTCGCGATACCCGCTGAGATTAAAGATCTGAAGGGGGCTATTGATTTGAAGAGCATCGGTGGTATGGAAGGCGCGGTAGTCAAGATCTCTGGCGGCGCGGCCGACCACGATCTTCATGCCATGTACAAGGTGAATGTGGAAGATCTATCGCAACTCCTCGCGTACCACGAAGTGTTTGGGAAGCTGAATACGGAGGGACAGCCGGCCCAAGGCGCCAAGCCCTTGGTCGAGATTGAGGTAGAAGCGGGTACAAGCGCTGCCATGTCCGAAGCCGAGACGTCTCCCGGACACCACTCCTGCGATATTTGCGGAAAGATCTTCCAGTTCCGGTACCAGCTGATTGTCCATAGACGTTATCATGGTGAAAGAAAGCCCTTTACCTGCCAAGTGTGTGGCTCTGCATTCGCCAATCCTGTTGAACTATCGAGACACGGGAAATGTCATGTTGCCGGGGCAATTGTGGAGGACAGGAGCGCGAAGCGACTGACGCAGGACAAACCCTACGCATGCACCACGTGCCACAAGACTTTCGCTCGCAAGGAGCATCTAGACAACCACGTGAGGAGTCATACAGGAGAGACGCCTTACAGATGTCAGTACTGTGCGAAGACCTTCACTCGCAAGGAGCACATGGTGAACCACGTCCGGAAACACACGGGCGAGACGCCGCACCGCTGTGACATCTGCAAGAAGAGCTTTACCAGGAAGGAGCACTTCATGAACCATGTCATGTGGCACACCGGTGAAACGCCGCACCATTGTCAAGTATGCGGCAAGAAATATACTAGGAAGGAGCATTTAGCCAACCATATGCGCTCCCATACAAATGACTCCCCATATAAGTGTGATTTGTGCGGAAAGGCATTTACGAGAAAGGAACACTTCAGCAATCACATTCTGTGGCACACTGGCGAGACTCCTCATCGTTGCGACTTCTGCTCCAAAACTTTCACTCGTAAAGAGCACCTATTGAACCATGTGAGACAACACACGGGGGAGTCCCCGCATCGCTGCAACTTCTGTGCCAAGTCGTTCACAAGACGGGAGCACTTGGTCAACCATGTGAGACAGCACACGGGAGAGACGCCCTTCCAGTGTGGATACTGTCCCAAAGCGTTCACTAGGAAAGATCACTTGGTAAACCACGTCCGGCAGCACACGGGTGAATCTCCGCACAAATGCTCGTACTGCACCAAATCATTCACTCGCAAGGAGCATCTCACGAACCACGTGAGACAACATACAGGGGAATCCCCGCATCGGTGCTCCTTCTGTGCCAAGAGCTTTACCAGGAAAGAACATCTCAACAACCATGTTAGACAACACACCGGCGAGACTCCACACAAGTGCACGTTCTGTCCGAAGGCGTTCAGTCGCAAGGAGCATCTGAACAACCACGTGCGTCAACATACTGGAGACTTACCTCACACGTGCACCTACTGCAACAAGAGCTTCTCGAGGAAGGAGCACCTCACCAACCATATCAGTCGCAAGGAGCATCTGAACAACCACGTGCGTCAACATACTGGAGACTTACCCCACACGTGCACCTACTGCAACAAGAGCTTCTCGAGGAAGGAGCACCTCACCAACCATATCAGACAACATACGGGCGAGACCCCGTTCAAGTGTACGTACTGTTCGAAGTCGTTCTCCCGCAAGGAGCATCTGAACAACCATGTCCACTTGCACACTGGAGAGACGCCGCACAAGTGCCCCTTCTGTACCAAGACCTTCTCGCGGAAGGAGCATCTAACAAATCATATCAGGATACACACAGGAGAATCCCCGCATCGGTGCGAGTTCTGCCAGAAGACGTTCACCCGTAAGGAACATCTGAACAATCACTTAAAGCAACACACGGGTGATACGCCGCACATGTGCAAAGTTTGCTCGAAACCTTTCACAAGGAAAGAGCATTTGGTTTCGCATATGAGAGCGCACAGTTGCGGTGAGCGGCCCTACAGCTGCGATCAGTGCGGCAAGTCCTTCCCTCTAAAAGGAAACCTGATGTTCCACGAGCGGTCGCATTACAAGTCCGGCGCCGGGGCAAGGCCGTTCCGATGTGATATCTGCTCGAAGGACTTTATGTGTAAAGGCCATCTAGCAGCGCATCTGCGAACGCACAATGACGCGTCAGCGGGGGAGGCGGGTGCGGTGACCGGCGAGGAGTGTACCAGCGCGTGCACCAAGTGCGAGCCTACTGATGACTCACAGCCGCAGCAGATGACTAAACTTGAGAGGGACTCAACCGAAAACAGGCCGACCGAAGTAACAGTAGCACAAAACCCTCAAAATAACGCAACTGTGATGCAAATTACTAGCCAGCAAGTGGTACGTACGAGCGTAGCGACGGGAGGAGCGGACGCTACAAACGTTACGACCTACGCCCCCACCATCACTCACCATCCTGTCACAGTCAACTATTAG
Protein Sequence
MNPEHHNMNTGGGQPPGNSESQNQRAQSSQQQQQVNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDALGQTHSILNGDPNIILGHHAGGQQVTVSGPGGQQIPVTQIIAAQPGQNHEALVAHNQQQELQAQQGSSNAQQQVSVSNQASHQQVPNQRVEFVQHHNIDMAHHSQQHIMQQQLMTATRPDHANQQIQLTVSEDGIVTVVEPGGGGGKLVDKEELHEAIKMPTDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDPCIVKDEKNNSKMETAQFAIPAEIKDLKGAIDLKSIGGMEGAVVKISGGAADHDLHAMYKVNVEDLSQLLAYHEVFGKLNTEGQPAQGAKPLVEIEVEAGTSAAMSEAETSPGHHSCDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHVAGAIVEDRSAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDSPYKCDLCGKAFTRKEHFSNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCSFCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAFSRKEHLNNHVRQHTGDLPHTCTYCNKSFSRKEHLTNHISRKEHLNNHVRQHTGDLPHTCTYCNKSFSRKEHLTNHIRQHTGETPFKCTYCSKSFSRKEHLNNHVHLHTGETPHKCPFCTKTFSRKEHLTNHIRIHTGESPHRCEFCQKTFTRKEHLNNHLKQHTGDTPHMCKVCSKPFTRKEHLVSHMRAHSCGERPYSCDQCGKSFPLKGNLMFHERSHYKSGAGARPFRCDICSKDFMCKGHLAAHLRTHNDASAGEAGAVTGEECTSACTKCEPTDDSQPQQMTKLERDSTENRPTEVTVAQNPQNNATVMQITSQQVVRTSVATGGADATNVTTYAPTITHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01546831;
90% Identity
-
80% Identity
-