Yseq020299.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000674.1:456446-457558[+]
Transcription Factor Domain
- TF Family
- SAND
- Domain
- SAND domain
- PFAM
- PF01342
- TF Group
- Other Alpha-Helix Group
- Description
- The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0051 2.1e+02 2.8 0.0 51 68 23 40 18 45 0.86 2 9 0.0051 2.1e+02 2.8 0.0 51 68 61 78 56 83 0.86 3 9 0.0055 2.2e+02 2.7 0.0 50 67 99 116 95 119 0.85 4 9 0.0051 2.1e+02 2.8 0.0 51 68 138 155 133 160 0.86 5 9 0.0055 2.2e+02 2.7 0.0 50 67 176 193 172 196 0.85 6 9 0.0051 2.1e+02 2.8 0.0 51 68 215 232 210 237 0.86 7 9 0.0052 2.1e+02 2.8 0.0 50 67 253 270 249 275 0.85 8 9 0.0035 1.4e+02 3.3 0.0 50 65 292 307 288 310 0.87 9 9 0.00095 39 5.1 0.0 50 68 331 349 326 354 0.85
Sequence Information
- Coding Sequence
- ATGCGCACCGCGGATGATCCGCTCACATACAGCAGTGGACTGCTATTGGCTGATGCAGAACTCACCACTAGAAGCGACCAATGGCGTGATCCCATCAGAGTCAATGGCGTCGACATGAGCACCGCGGATGATCAGCTCACAGACAGCAGTGGACTGCTATTGGCTGATGCAGAACTCACCACTAGAAGCGACCAATGGCGTGATCCCATCAGAGTCAATGGCGTCGACATGAGCACCGCGGATGATCAGCTCACAGACAGCAGTGGACTGCTATTGGCTGATGCAGAACCCACCACCAATAGAAGCGACCAATGGCGTGATCCCATCAGAGTCAATGGCGTCGACATGAGCGCCGCGGATGATCCGCTCACATACAGCAGTGGACTGCTATTGGCTGATGCAGAACTCACCACTAGAAGCGACCAATGGCGTGATCCCATCAGAGTCAATGGCGTCGACATGAGCACCGCGGATGATCAGCTCACAGACAGCAGTGGACTGCTATTGGCTGATGCAGAACCCACCACCAATAGAAGCGACCAATGGCGTGATCCCATCAGAGTCAATGGCGTCGACATGAGCGCCGCGGATGATCCGCTCACATACAGCAGTGGACTGCTATTGGCTGATGCAGAACTCACCACTAGAAGCGACCAATGGCGTGATCCCATCAGAGTCAATGGCGTCGACATGAGCACCGCGGATGATCAGCTCACAGACAGCAGTGGACTGCTATTGGCTGATGCAGAACCCACCACCAATAGAAGCGACCAATGGCGTGATCCCATCAGAGTCAATGGCGTCGACATGAGCGCCGCGGATGATCAGCTCACAGACAGCAGTGGACTGCTATTGGCTGATGCAGAACTCACCACCAATAGAAGCGACCAATGGCGTGATTCCGTCAGAGTCCATGGCGTCGACAAGAGCACCGCGGATGATCAGCTCACAGACAGCAGTGGACTGCTATTGGCTGTTGCAGAACTCACCACCAATAGAAGCGACCAATGGCGTGATTCCGTCAGAGTCCATGGCGTCGACGTGCGCGCCGCGGATGATCAGCTCGCAGACCACGCCGAAGAGAGAGTCCGCCCAGTGGTCGCGCTCATCTGA
- Protein Sequence
- MRTADDPLTYSSGLLLADAELTTRSDQWRDPIRVNGVDMSTADDQLTDSSGLLLADAELTTRSDQWRDPIRVNGVDMSTADDQLTDSSGLLLADAEPTTNRSDQWRDPIRVNGVDMSAADDPLTYSSGLLLADAELTTRSDQWRDPIRVNGVDMSTADDQLTDSSGLLLADAEPTTNRSDQWRDPIRVNGVDMSAADDPLTYSSGLLLADAELTTRSDQWRDPIRVNGVDMSTADDQLTDSSGLLLADAEPTTNRSDQWRDPIRVNGVDMSAADDQLTDSSGLLLADAELTTNRSDQWRDSVRVHGVDKSTADDQLTDSSGLLLAVAELTTNRSDQWRDSVRVHGVDVRAADDQLADHAEERVRPVVALI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -