Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.045 32 5.5 0.1 25 37 12 25 11 28 0.83

2 9 0.065 47 5.0 0.1 25 37 30 43 29 45 0.85

3 9 0.094 67 4.4 0.1 25 37 48 61 47 68 0.75

4 9 0.066 47 4.9 0.2 25 37 66 79 62 85 0.87

5 9 0.045 32 5.5 0.1 25 37 102 115 101 118 0.83

6 9 0.065 47 5.0 0.1 25 37 120 133 119 135 0.85

7 9 0.26 1.8e+02 3.0 0.0 25 37 138 151 137 158 0.75

8 9 0.043 31 5.5 0.2 25 37 156 169 154 172 0.85

9 9 0.062 44 5.0 0.1 25 37 174 187 173 190 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.045	32	5.5	0.1	25	37	12	25	11	28	0.83
2	9	0.065	47	5.0	0.1	25	37	30	43	29	45	0.85
3	9	0.094	67	4.4	0.1	25	37	48	61	47	68	0.75
4	9	0.066	47	4.9	0.2	25	37	66	79	62	85	0.87
5	9	0.045	32	5.5	0.1	25	37	102	115	101	118	0.83
6	9	0.065	47	5.0	0.1	25	37	120	133	119	135	0.85
7	9	0.26	1.8e+02	3.0	0.0	25	37	138	151	137	158	0.75
8	9	0.043	31	5.5	0.2	25	37	156	169	154	172	0.85
9	9	0.062	44	5.0	0.1	25	37	174	187	173	190	0.86

Coding Sequence: ATGGTAAACTCCAGATGCTTGGCAAACTACACGTACCACCAAGTCCCTTATCGCACGTTACACTCCAGATGCTTGGCAAACTACAAGTACCACCAAGTCCCTTATCGCACGTTACACTCCAAACGCTTGGCGAACTACAAGTACCACCAAGTACCTTATCGCACGTTAAACTCCAGATGCTTGGCAAACTACACGTACCACCAAGTCCCTTATCGCACGTTACACTCCAAACGCTTGGCGAACTACAAGTACCACCAAGTACCTTATCGCACGTCAAACTCCAGATGCTTGGCAAACTACACGTACCACCAAGTCCCTTATCGCACGTTACACTCCAGATGCTTGGCAAACTACAAGTACCACCAAGTTCCTTATCGCACGTTACACTCCAAACGCTTGGCGAACTACAAGTACCACCAAGTTCCTAATCGCACGTTAAACTCCAGATGCTTGGCAAACTACACGTACCACCAAGTCCCTTATCGCACGTTACACTCCAGACGCTTGGCGAACTACAAGTACCACCAAGTTCCTTATCGCACGTTACACTCCAAACGCTTGGCGAACTACAAGTACCACTAA
Protein Sequence: MVNSRCLANYTYHQVPYRTLHSRCLANYKYHQVPYRTLHSKRLANYKYHQVPYRTLNSRCLANYTYHQVPYRTLHSKRLANYKYHQVPYRTSNSRCLANYTYHQVPYRTLHSRCLANYKYHQVPYRTLHSKRLANYKYHQVPNRTLNSRCLANYTYHQVPYRTLHSRRLANYKYHQVPYRTLHSKRLANYKYH

Sequence clustering based on sequence similarity using MMseqs2