Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 6.9e-12 4.9e-09 36.9 0.0 4 41 28 65 27 69 0.90

2 2 5.8 4.2e+03 -1.3 0.0 28 41 251 264 251 267 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	6.9e-12	4.9e-09	36.9	0.0	4	41	28	65	27	69	0.90
2	2	5.8	4.2e+03	-1.3	0.0	28	41	251	264	251	267	0.85

Coding Sequence: ATGCACGTTGCTTCCTTTTTTCTATTTGCAGTTAAGAAAAAAAAAGACAGCAATTTCAAAATCTTACGCTACCCAGACTTGGACATGCAATCCGCAATTAGAGCAGTGCGAGATGGAAGATTAAAGATAAGAGAAGCAGCTCGGCACTATGGTGTGCCACACAGCACTCTTATTAATAAATTAAAAGGAAGGGTGCCTGAACACAGGAAGATGGGTTGTGACACATATTTGACAGTTAGCGAGGAAAAACTTTTAGTAAGTTGTGGAGTCTACCCATTGAACCCATCAGCGGTTGATTACACCAAATGTATGGACCACGAAGTGAGAAAAGTTGCACCAAAACCTGATGAGACCACAGTGCCTGAGACACCACCAGACGCTTTGGTAACTACATCAGTTACTCGTCCTGAACCGGATCCCAAAACACCAGATAATTTGGTTAGTAATCCTAATCCCATAACACCAAGGTCTGTTAACGGACATCAGGATAATACCGATACACAGTGTACAGAAAACAGGAAACTGCTTACGCCCAATAGTAATCCTGAAGCAGCAGATCCCATAACACCAGAACATCAGGACAAGAACTTCACACCTGGAGATAACAGAATAGTACCTATTTCCAATCAGAAATTGGTGCAGATAATGGCGCAGAAACAAAAACAAGTGAGTCCTGCATTTTCAAATTATCTGCTTTGGCCATTAGACTCGCCAATTAAAAAAAGAGTGAAAGAACGTCTGCCGCTAGCAATTTCATCACCCTCATTTCAGGAATACTACGAAAGAAAAGAAAAAGAAAGTGGAAAGAGGAAAAGAAAGAGAAAAAAATCCATAAGGCAGCAAAAAAAACTTGTACTGACGGTAAGAAAAGTCTAA
Protein Sequence: MHVASFFLFAVKKKKDSNFKILRYPDLDMQSAIRAVRDGRLKIREAARHYGVPHSTLINKLKGRVPEHRKMGCDTYLTVSEEKLLVSCGVYPLNPSAVDYTKCMDHEVRKVAPKPDETTVPETPPDALVTTSVTRPEPDPKTPDNLVSNPNPITPRSVNGHQDNTDTQCTENRKLLTPNSNPEAADPITPEHQDKNFTPGDNRIVPISNQKLVQIMAQKQKQVSPAFSNYLLWPLDSPIKKRVKERLPLAISSPSFQEYYERKEKESGKRKRKRKKSIRQQKKLVLTVRKV

Sequence clustering based on sequence similarity using MMseqs2