Basic Information

Insect: Ypsolopha sequella
Gene Symbol: -
Assembly: GCA_934041175.1
Location: CAKOGU010000518.1:862491-865250[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3e-12 2.2e-09 38.0 0.0 3 36 11 44 9 51 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3e-12	2.2e-09	38.0	0.0	3	36	11	44	9	51	0.88

Sequence Information

Coding Sequence: ATGGAGAAAAAAAGGGCGAAGTATTCCAAGGAAAGTATTCAGCTGGCATTAGAAGCAGTCAAATCGAAACAAATGAGTATTAATAAAGCTTCAAAGTCTTTTAATATCCCAAAAAGTACACTAATAGATACATTGCATGAAAAATACAAAAATCCTGGTCACCTTGGTGGCCCGACTGTTTTAACCTCGGATGAAGAGCTATACTTGGTTAAATGGATAATAGAAGTGGGTGAAATAGGTTTCCCAGTTACTAAAAACCAACTATTAGATTCAGTATCTAATCTTATAAAAAATTTAAAACGAAACACTCCTTTTAAAAATGATAAGCCCGGAAAAAAATGGTACAATAGTTTTCTGTCAAGGCACCCTGAAATATCCAAGAGAGTTCCACAGGCCCTATCAACATGCAGAGCAGCAGTAACTGAGCTAAATATCAGAAACTGGTTTACCAATGTACGATCATACTTTACAGAAAAAAACTTAATGGAAATATTTGATGACCCTAGAAGAGTGTTTAATTGTGATGAGTCAGGATTCTATTTATCACCAAAAGAAAAACAAGTATTAGTGAGAAAAGGATCAAAAAAAGTTTACAGCCGCATAGCTAACGATGAAAAAGAATGCCTAACAGTTCTATTAACCATTGGGGCAGATGGAGCTGTGCCACCTCCTTTAGTGCTTTACCCCTACAAAAGATGTGTGCCTTCAGCAATTATAACACAAATGCCACGCCAATGGGCCATAGGACATTCTGAATCTGGATGGATGACAAGCGAAAGTTTCTATGAGTATATTACAAATGTGTTTTCACGTTGGCTTCAAGAAGCCAATATACCATTGCCAGTCGTTTTATTCCTAGATGGCCATTCTTCACACATAAACTTGACAATCTCGGAATTCTGTAAAGATAACGGTATCATACTGACTGCTTTTTATCCAAATGCTACCCACCGTCTCCAACCACTAGATGTTGGTGTATTTTATCCGATCAAAAACAAATGGCGAAATGATATTTCATCCTGGAGAATGAATAATGGTGGTAGAAAATTGCAAAGGAGTGAATTTGCCAAGTTGCTTCAAAAGACGTTAGATACGACTTTAACTACTGATATAATTAAAAATGCTTTCTCAGCATGTGGAATTGTCCCATTTAATGAAAATAATATTGATTTTTCCAAATTAGTTAAACAAACGGCCAGGAAAGAAATGTCTAGTCACCCACAGAACTCAGAAGACAAAGAAGATAGTAATACCCAGAGCAGCGGTGATGTTACTGACTTGCAGTTAATAAATGAAGTTGAGAAAAGGATAGATAAAAGTGTATTAGAAAAGTTTAGAAAGGCAAAGTCTTTAACGGACATAGAAGAAAAGTATATTGCCTTATATGAGTTCTGGAAAAATCTTTACACAAAAAGTCTAGATAATGAGAGATCTAGTCACGATATTACCTTGGAAAATAACTTGATTATTGAATCTGCAAACCAAACACTTGAAAAGATCAGTCTTGAAGATTTCTGGTTTGATAATACTGATAAAATTGAAGCTACAGTAGGAACTGACGGTGCTTTGGAGTTTGACGCAATTATTCCTGCAACTACATTATTTGAGGATAATGTTCGAACATTTCAAACAACTACTACAAATGAAGATCTTGATCGGAATTTACAAAATAGCCAACAGACTTTACAAAACTGTATGATTGAGCAGAAAACACCTATCAAAGAAAATATGTCCCTTACGACTAACACATACTCTGATTCAACATCTAAACATACAGTACCATCTGAATATCAAAAATACCTATGCCCTGCAGCAGTTCCATCCACATTCAGTAATATAACACCTATTAAACAGTGTGAGCGATTTGAGGAACCCAAGGAAAATTATCCCACACCATTCAAAAAGGCTTTGTTTTGGCCAGAAAAAAATAATAGAAAAAAAGGAGGCCCCGTAAAAAAGCAGAAGATATATCCTACTGTGTGTATTAGTGATGAATTTATAAACTTTCAAAGAAGACAAGCAGAAGAAAAAAAGAAAAAAGACGCTGAAAAATTCGAGAGAGCTAAAAAAAGAGAAGAAAAAAAGAAACAGATACAAGAAAAAAATAGTAAATCTGTGGCAAATAAGACTAAAATCACAAGCATACAGAAAAAAGTAATGAAAAATACAAATAATGAGCAACAAATAACACCTGTCAAGAATTTCAGTATGGCCTCAGGAATAAGTGACACAAAAAACAATGAAAATGGAATTAAAATAAAACAAAACATTACACAGAAAGAACCAAAGCCATCAACAAGTACGTGTACAACTAATTTATTCAAGGAAAAGAAAAGATTAAGAACCCCATCTACTAGTTCTTCCTCTGAAAATAGCAGTTTACACAAACAAAGATTGTGGAATGAATCAGATGACTCGTCAGATGATCTTTTCAGTTTCGGCTTAAAAGAACATCAAAAAACCTCACCAAATGAGAGAAAAGAACGTCAAGTGAAATATAGAATTGATGATTCAGTACTTTTAAAGCTCGACCACAATTATAAAGTTGGCAGAATAGTTGCTAAAAATGAAACAATGTATTTTGTTACATTATTAGAAACAAGAAAGACAAATGGGCAACTGAGATTTGCTGAACCTAAGAAAAAAATTGCCACAGAAATTGAAAAAGAAAAAGTTGTAAAGCCAGTTAAACTTATTGAAACTGAAGACGATGTTTTCATACTTTTGAATAGCAAGGACTGTAATTATTTTAATTTCTAA
Protein Sequence: MEKKRAKYSKESIQLALEAVKSKQMSINKASKSFNIPKSTLIDTLHEKYKNPGHLGGPTVLTSDEELYLVKWIIEVGEIGFPVTKNQLLDSVSNLIKNLKRNTPFKNDKPGKKWYNSFLSRHPEISKRVPQALSTCRAAVTELNIRNWFTNVRSYFTEKNLMEIFDDPRRVFNCDESGFYLSPKEKQVLVRKGSKKVYSRIANDEKECLTVLLTIGADGAVPPPLVLYPYKRCVPSAIITQMPRQWAIGHSESGWMTSESFYEYITNVFSRWLQEANIPLPVVLFLDGHSSHINLTISEFCKDNGIILTAFYPNATHRLQPLDVGVFYPIKNKWRNDISSWRMNNGGRKLQRSEFAKLLQKTLDTTLTTDIIKNAFSACGIVPFNENNIDFSKLVKQTARKEMSSHPQNSEDKEDSNTQSSGDVTDLQLINEVEKRIDKSVLEKFRKAKSLTDIEEKYIALYEFWKNLYTKSLDNERSSHDITLENNLIIESANQTLEKISLEDFWFDNTDKIEATVGTDGALEFDAIIPATTLFEDNVRTFQTTTTNEDLDRNLQNSQQTLQNCMIEQKTPIKENMSLTTNTYSDSTSKHTVPSEYQKYLCPAAVPSTFSNITPIKQCERFEEPKENYPTPFKKALFWPEKNNRKKGGPVKKQKIYPTVCISDEFINFQRRQAEEKKKKDAEKFERAKKREEKKKQIQEKNSKSVANKTKITSIQKKVMKNTNNEQQITPVKNFSMASGISDTKNNENGIKIKQNITQKEPKPSTSTCTTNLFKEKKRLRTPSTSSSSENSSLHKQRLWNESDDSSDDLFSFGLKEHQKTSPNERKERQVKYRIDDSVLLKLDHNYKVGRIVAKNETMYFVTLLETRKTNGQLRFAEPKKKIATEIEKEKVVKPVKLIETEDDVFILLNSKDCNYFNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -