Yseq013088.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000395.1:58656-61349[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2e-06 0.0015 19.4 0.0 4 39 26 61 23 66 0.91 2 3 4.1e-05 0.029 15.2 0.0 4 37 110 144 109 150 0.90 3 3 1.6e-05 0.012 16.5 0.0 2 41 204 244 203 246 0.90
Sequence Information
- Coding Sequence
- ATGAAAAAAAAACGTGTTGTCAAGCTAGAACCACCACCAACTTCAGATGAAAATGAGGACAGTTACACCATAGGTACACTTTTAGAAGCGGTAGAGAAGGTGAAATCAAAATCTTTAAAGTTACATGATGCAGCTATAAGATATCAAATACCAAAAACTACCTTACTTCGAGAGCTCCGTGGTTACCAACCCTTAAAAGGAGACGGTAAAGTGAATGTCATTAAAACATCAAAAAGCAGTGATCAGAAGCAAGATGAACTAAAGAAGAAAAAAAAGGCCAATGTTGTCAAGCGTGCTTATGGCACGAAAAATAATTATTCGCAAGTTAAACTTGAAGAAGCTATTAAACAAGTGAGATCCGGAGCCATGAGAATTTGTGATGTAGTGACAGAATACAAAATACCAAGGGGTACTTTATATCACAAGCTTAATGACAATCACTTGAAAAAAATTGGACGACCGTTCAGTCTTGAAGGTCCAAAAAAAATAATGCTTAAAAGGCTTCGTGAGAACAAAAAAGCTAAAAACGTTAAATTGGAAAAACCAAAAAGAAAAAGGAAAGCCCCCGGCGAGAAAACACGTGCGTATGGAACGAAAAGTAATTATACGCAAACTATTCTTGAAGAAGCACTAAAAAAGGCTAGATCAGGGACTATGAAACTAAGTGACATATCAACGAAATTCAACATACCTAGAGCTACGTTGTATCACAAACTAAAAGAAAATCATACAAAGAAAGTTGGGCGACCAGTTACGCTTTCAGATTCTGAAGAAGCAGACATAAGAGATCAGGCTTCAGCTTTGATAAAGTCAGATATTGCAATAACAATAAGCGATTTGAGGGTCATGGTTAAAAACTTTCTTGACAAAGAAGGAAAGAAAGTAATAGAATTTAAAAACAATCTTCCAGGGGTGACATGGAGTAGTCGCTTCTTGAGTAGATATCCCATCCTCAAAGAAAAATTAACATTTATTCACCCTCTGAAACGAGTACATAAGAAACAATTTACACACTTTTATGCCAACTTGGCAAAAAAGCTAGAGGATGTACCTCCTGAAAATATTTACACCGTTGACGAATCTGGGTTCGGATACAATCTAGATAATCCGCATATGTTTTATCGACAAGATCGACATCCTGAAATCACAAAAGAATCAACAAAATCGTCCTTCACGGTTGTCAGTTGCGGGAATGCTGTAGGAGAGTTGTTACACCCGTATTTTATATTTATGGCCCAAGATGAATCTTCGGAATGGATCCAAAATGCCCCGGAAGGGTCAAGAATGTCAGTCTCAAACTCAGGATGGATAAATGCTGAGATCTTTGAAGACTGGCTTGAACAGCACTTTATACCTTTTGTTGATGGAAAAGAAAAAAAAGTAATTATATGTGATTACTTAAGCGCGCATATTTCTACAAAATCATTGGAGCTCTGTCTGAAAAACAACATCGTATTTATATGCCTGATTCCTAATTGGCCATACTTATTGCAGCCACTGAAAATTAAATATTTTTCGCAATTCGAGGCACACTGGCGTGAAACTTTAATACACTTTCTACAATCGACAAGTGATGAAATTATCACAAAAATGTCTAATAATCAATTTGCTAGTCTTATTGGAGAGACGCTTGTGCTCAACAAACCTACCTCTTCGGATAATTTGATTGCAGGATATCGACTTACTGGAATATATCCAATAGCAAACGATACGATTTTAAGAAAACTTCCCGCTAAATACTTTGCTAACAAGCATATATCTTACAATTTACCACCGAAACTTGAGAAAAAAGTAAAAAAAGAAAACACTAACTCAGATTTAGACGACTGCATTCCAAATGATCAAATAACCCAAAAGAACACAGCAAAAGCCGTGAAATTGGAAGATACAGCAAAATCTTTTGATACCAAGAACCCTAAACCCAATAAGAAAAAAGAGCGTTTAGTTGCACAAATATCTAGGAAAAGAAAACTCCTTGCTGGACCTATAGATGAAAACAAAAAGAAGTTAAGCACAGAACAGACATTTCAAACGCCTTTCAACCAGATTCTTCAGTTTAAAAAGACTAAAGAGGAAGTGCCAGAGAATAAAATTATAATCATTAGCAGTTCTAAGTCTCATTATAACCAAAGTATTTCAGAAAACAGCGAAGACGACGGCGTATCAAATGACTATGATTTTGAAGAGACATTTCACACACCAATCAAACAGATTTTTAAGTTTAATAAAATGAAAGAGGAAGTGCCAAGCGATATCACTACAATTAGCTGTTCAAAGTCTCTCTGTAACCAAAATATTCCAGTAAAGAGCGAAGACGACGGCGTATCAAATGCCGATGATTTTGAAGAGATCGAGTTCCTTGATGAAAGTGCTTTTGAACATGAAGATGTACCGGAATTAAAAGAAATGAGTGATTCATTGTCTCATGTAAAATCGCTTAACGTTGGTGATTTCTGCTTGATTAATTTGGAGGAGAGCATTTTTCCAGCGGAAATCGAAAGTACGTCTTTGCAACTAGTAAAAGTAAATGTTCTCCAAAAGTTAAATGAAGGTTGGGGTTGGCCAAGGAAAGCTTTGAAAATTTGTATCGGCATTGAAGATATAATTCGCGTGATTGATTCAGAAAAGGTTTCATCGAAGGGCGGTAAATTTATCATAGAAGATAAACTATTGTGTAGTAACTGGGGTGATTAA
- Protein Sequence
- MKKKRVVKLEPPPTSDENEDSYTIGTLLEAVEKVKSKSLKLHDAAIRYQIPKTTLLRELRGYQPLKGDGKVNVIKTSKSSDQKQDELKKKKKANVVKRAYGTKNNYSQVKLEEAIKQVRSGAMRICDVVTEYKIPRGTLYHKLNDNHLKKIGRPFSLEGPKKIMLKRLRENKKAKNVKLEKPKRKRKAPGEKTRAYGTKSNYTQTILEEALKKARSGTMKLSDISTKFNIPRATLYHKLKENHTKKVGRPVTLSDSEEADIRDQASALIKSDIAITISDLRVMVKNFLDKEGKKVIEFKNNLPGVTWSSRFLSRYPILKEKLTFIHPLKRVHKKQFTHFYANLAKKLEDVPPENIYTVDESGFGYNLDNPHMFYRQDRHPEITKESTKSSFTVVSCGNAVGELLHPYFIFMAQDESSEWIQNAPEGSRMSVSNSGWINAEIFEDWLEQHFIPFVDGKEKKVIICDYLSAHISTKSLELCLKNNIVFICLIPNWPYLLQPLKIKYFSQFEAHWRETLIHFLQSTSDEIITKMSNNQFASLIGETLVLNKPTSSDNLIAGYRLTGIYPIANDTILRKLPAKYFANKHISYNLPPKLEKKVKKENTNSDLDDCIPNDQITQKNTAKAVKLEDTAKSFDTKNPKPNKKKERLVAQISRKRKLLAGPIDENKKKLSTEQTFQTPFNQILQFKKTKEEVPENKIIIISSSKSHYNQSISENSEDDGVSNDYDFEETFHTPIKQIFKFNKMKEEVPSDITTISCSKSLCNQNIPVKSEDDGVSNADDFEEIEFLDESAFEHEDVPELKEMSDSLSHVKSLNVGDFCLINLEESIFPAEIESTSLQLVKVNVLQKLNEGWGWPRKALKICIGIEDIIRVIDSEKVSSKGGKFIIEDKLLCSNWGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -