Yseq026490.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010001000.1:1-11752[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-11 5.6e-08 33.5 0.0 4 39 121 157 118 161 0.89 2 4 1.3e-10 9.3e-08 32.8 0.2 4 39 175 210 172 213 0.90 3 4 1.8e-13 1.3e-10 42.0 0.0 2 45 228 272 227 272 0.96 4 4 4.7e-18 3.4e-15 56.6 0.0 1 43 279 322 279 324 0.94
Sequence Information
- Coding Sequence
- CAGCCGACCTCGCTGGAAGAGCTGGCGCCGCCCGCGCCCCCCGCCCCCTCCGCGACTCCCGTCTGCATCAAGCAGGAGCCCGCCGACTGCGCCATCGACACCTTGGAGTCCGCATCTCATGCGGAGCCTACCATCGAGACCTTGGAGTCTACGCCGCACACCAGTTCCAACCTTCACTTAAAGCGCCATCTATCACTTTTGAGCTCGGAACTACAGTCAGAGTTCATGCCGTTGATGCCCGTCAAGGATGAACCCAATTCTGAGGGAGAACAAGCTCAGCTGAGCGGGGACGACACGAGCGACTCGTGTAGCGCTGCGGAGGCGATCAACAGAACTAGCCCCAAGTCCTGGACGCAGCAGGATATGGATAATGCACTCGAAGCGTTGAGGAAACACAATATGAGCCTAACCAAGGCATCAGCAACTTATGGTATTCCTTCAACAACCCTCTGGCAACGCGCGCACAGACTCGGCATCGATACTCCTAAGAAGGAGGGCTCCTCCAAGTCCTGGAGTGAGTCTGATCTGCGAGGGGCGCTGCACGCGCTGCGGGCAGGTGCTATTTCTGCTAACAAGGCGAGCAAGGCGTACGGTATCCCCAGCAGCACCCTGTATAAGATAGCGCGGCGTGAAGGCATCCGTCTGGCGGCGCCCTTCAACGCGGCACCCACTAGCTGGCGCCCCTCCGACCTGGAGCGAGCTCTCGACTCCATCCGCTCCGGACACAACTCCGTGCAGCGGGCCTCAGCTCAGTTTGGGATACCTACTGGTACGTTATATGGCCGCTGCAAGCGCGAAGGCATCGAATTATCTAGATCCAACCCGACACCATGGTCCGAAGATGCAATGGGAGAAGCTCTAGAAGCTGTCAGAGTTGGCCAAATGTCGATCAACCAAGCGGCTATCCACTACAATCTGCCTTACTCTTCTCTCTATGGACGCTTCAAACGATGTAAATATCCACAGAGTCCCCAACAAATACAACAGCAAGGTGTTCCCGAATGTCCTGAGATTGAACAACAAACCCAAATCCAGGATCCACCATACCAACACTATCATCAACACAATATGCAGATGTCCCATACAATGCATCCACATCCTGACCATAACGTCGATCAAATGAACGTCATGAATTACCATACAAATACCATGCAACACCATATGCCTGATTCTTCAGTCAGCGCCCAAATGCATGATCCATCGATGCTTACGAACGTTATGCTTCATGAAGAAGCTTATAGCCAGCCAGCCATGTACTACAGTCAGACTCATACAAACGGTATAACAACAAGTTGA
- Protein Sequence
- QPTSLEELAPPAPPAPSATPVCIKQEPADCAIDTLESASHAEPTIETLESTPHTSSNLHLKRHLSLLSSELQSEFMPLMPVKDEPNSEGEQAQLSGDDTSDSCSAAEAINRTSPKSWTQQDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSESDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRPSDLERALDSIRSGHNSVQRASAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYPQSPQQIQQQGVPECPEIEQQTQIQDPPYQHYHQHNMQMSHTMHPHPDHNVDQMNVMNYHTNTMQHHMPDSSVSAQMHDPSMLTNVMLHEEAYSQPAMYYSQTHTNGITTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -