Yror007761.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- -
- Assembly
- GCA_947308005.1
- Location
- OX371022.1:7865726-7878174[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.2 2.4e+02 3.1 3.0 1 23 846 869 846 869 0.95 2 9 0.0095 0.69 11.0 0.1 3 23 895 916 893 916 0.91 3 9 0.00054 0.039 15.0 2.1 2 23 938 959 937 959 0.97 4 9 0.0021 0.15 13.1 0.6 2 23 964 986 963 986 0.94 5 9 0.18 13 7.0 0.6 2 19 990 1007 989 1012 0.87 6 9 1.2 87 4.4 1.0 1 20 1022 1041 1022 1045 0.71 7 9 0.00015 0.011 16.7 1.5 1 23 1052 1075 1052 1075 0.96 8 9 0.00055 0.04 14.9 2.5 2 23 1082 1103 1082 1103 0.96 9 9 0.021 1.5 10.0 1.0 1 23 1109 1132 1109 1132 0.96
Sequence Information
- Coding Sequence
- ATGACCATGGCCGACGGAATCCTGAGTGCGTGCCGCTTCTGCTTGGCCACGAAGAACGAAAGCGACGTAGAAGGCCCCGTCGACGATTCTCAACATATGGCAGTCTACGCTGAAATGCTGAAAGGCATCTTCAATATCGAACGACCACCACAACTGGCGACCGTTATGGAGCGAGCTAAAATAGAGCGCCGGAAAATACGAGGACTCTTCACAAGATGTGCCAATAAGTTGGAAGAAGCCCTCAACCCTGAGGCTCCGGCACAATCGGACTCTATAGGATCGTTTTACGACAGTCTGGTACAAAAACGTCAAAAGTTGGTAGAACTTGATAACCAAATTTTCTCTATGTGGTTAGACATTCCAGATCTAAACGAAGACGAATGGGACAGAGATCTGGAGACTACAGAGGACTACAATGAAAGATGGTTTAGTTTGGACAGAAAGTATAAAGATGCTACAAAAAGGGAATACACTCTCGTAAATACAGAGGAAAATGGATCAACGTCTACCAGAAACTTTGATAAGAGAGATGAACCTAAAGATAAAAATCCGAAGCCCAAAAGCAATGACGATGATAAACAGTTAGTGGCGCTATATCAGTCTTCTTTCACTACTACAGTCATTTTACCTACACTAGTTTTGGACGTAGTACATAAGGATAAGAGCGTCAAAGTAAGAGCACTTTTGGACTCAGGAGCACAGAGGTCATTTATTAAGGCAAAAGTTGCGAAAGAATTGAATCTGAAGCCATGTGGTGAAGCTCAAATATCACACAACCTATTCGGAGGAGTTGTCACCAAAAAGGAAGTACATAAGGCTTACCATGTACGTGTAAAGAGTAATGATTGCAAATATGAGACTAAAATTGAAGTATTAGAGCAAGATACAATTTGTAAAGACCTACCTAAAGCCAATGGAGATGTTATTGAAGCATTGCAAAAGAAAGGTATACATCTAAGTGACAATATGAAAGAAACAGGTGAGGTCAGTCTATTGATTGGAGCAGATTTCTTGGGAGCGTTGATGACAGGCAAGGTGATCACATTGAAAGATAATTTAATTGCTATAGAGACTCATTTTGGGTGGTCAGTACAAGGTCCGACAGCAAGTGTCGAGAGTGTAAACATCAACGTTAATACATCTTCATTTGATGTGGAAGATTTGTGGAAACTAGAGACGGTGGGAATTAATGATAATGCGAATACCCATAAAGCTAATGACAAAGAAATATCCACATTCTTCAATAGTACAATTAGAGTGAACGAGGAGAGCAGATATGAGGTTAAGTTACCATGGAAAGATGCCGTCAATCTGCCTACTAATTACAATTTAGCACTCAAACGTTTGAAGTCAAATACAAAGCGACTAACTCAGTTGGGAATATTGAAAGACTACGATCAGCAGTTCCAAGAATGGAAAGATAATTCAATTATTGAAGTAGTCAATGAAGCGGACCCTGAAAAAGATTGGGCTAAGATTGAAAACGAGACATCAGTGATGAAGATTAAATGGCAATTTAGCCCTCCTTCTGCGCCGTGGTGGGGAGGGTTTTGGGAGCGTCTCGTGAAAACGGTCAAAGAATCGCTCCGAAGAATACTCGGCAAAGCTTCTGTTGATGCCGTGACCTTAGAGACAGTGTTATGTGAAGTAGAGTCCATAGTCAATTCGAGACCACTTTCCGGTCTATCGGGAGAAACTGACGATGTTGCGGCACTCACCCCAGATATGTTTTTGAGTGGGCCCAAGATGCAAGGAACCCCAGATCTAGATCACGTAGACTTACACGCATCTAACAAAAGAGTTGTGAATCTCAGAGACCAGCTTAAAAGGCGTTTCCGCTCAGAATATTTGTCCTTATTAAAACAAAGCGCCATATCCGGAAATACGTCTACTATAGAAGTTGGTGACGTCGTTCTTGTAGAAACACAGAACAAGCGCGTTATGTGGCCTCTCGCTAGAGTGCTGGAAATCTATGAAGGGCCAGACGGTCATAAGAGAGTGGCCAAAATCAAGACAGCGCATGGCGAGCTGATATCCCACAGAGCAGCGCGGAGCTTCGCGTGCCGCTCATGTGTGGCCAGGCTCGCAGATGCGCGGGAGTTCAAGCAGATGGTCCTGGATAGTGAACTGAGATTTGCGGAGATGCTACAGCCAAATGAAACCCAAACTGACTTACCGAGAACCCAGCGCTCATCCAGAAGTAAAGCAAAGATTAATCATGTCACAAGGAAGGATTCAAAGCGGAATTCTGACGAGGAACTCCACTTTGAGGATGATATTGTTGGAGGATATTCCAGCAATGACATGGACACATTTGATGTGAAGACCGAGGAAACGCCGGAGACTTCGACCCGGCGCAAGCGGAAGCCAAGTGACGTCACATCCGCCGCGAGAACTAAGGGGGAAGCAGACGCGAGGAACGAAGATTGGAAAAAGCTGACTGACCGGCGCGGCAACGCCCCGATACTCCGAGAGAACTCGCTGAAACTACTGGCCAACTCCACCATGTGCATTTTCCAATGGCACAAGAGCCGGTACAGATGTTTCTGCTGCAACGACCCCTTTACCGACATGCAAAGTCTGCGGGAACACACTAACACAAGCCACACACTAAAGAATATAGAGAAAAAGATTATCCTACAGCAGAATCGCCTAGTCAAAGTCGAAATCTCAACTCTAGATTGTAAAATATGCGGACGGCCACTTGAAAATCTTGCCAGTTTAAAACAGCACTTAGTCAACGAGCATAAGCTGGATTTTACACTGAAAGAAGACCTGTTAGTTCCTTTTAAACTCAACTCGGAACGTCTACAGTGTCAGATTTGTTCGGAAAACTTCACAGTGTTCAGACATCTCAATATTCACATGAACAGGCACTATCAGAAACAAGTCTGTCACATTTGCGGAGCTGGCTTCTCAAACTTGGTTTATTTGAACCTGCACAAAACACGCTCGCACAAACCCTTGAAGTGTAATGAGTGTCAAATTGAATTCTTCACTAGAAGCAGTAAGAGAGCTCACGACTTGACAGTTCATAACGTTAAACTCGAGAGGAAGCTACGTTTCCCGTGCCCATTCTGCAACGAACGGTACTTCCAGGAACACCTGCGCATTCTGCACTTAGTGGAGAAACACGGTATGGAGAAACCCGCGCACAGCTGCTCTATATGCGGCAAAGTGTACGTGACAAAGAGTTTGAGGAATAATCATTTGAAAAATGTGCATATGAAACAGAAAAACAGGGAGTGTGATGTGTGTCATTTGAGGTTTTACACGAAGTCTGATCTCAGTCGTCATAAGGTGACTCATACGGGCGAGAAGAATTTCTCCTGCGCATCTTGTAACAATTTGTACGCGACAAAGGATTCGCTGAACAGGCATGTGAAAAGGACGCATAACACTTCAATTTGA
- Protein Sequence
- MTMADGILSACRFCLATKNESDVEGPVDDSQHMAVYAEMLKGIFNIERPPQLATVMERAKIERRKIRGLFTRCANKLEEALNPEAPAQSDSIGSFYDSLVQKRQKLVELDNQIFSMWLDIPDLNEDEWDRDLETTEDYNERWFSLDRKYKDATKREYTLVNTEENGSTSTRNFDKRDEPKDKNPKPKSNDDDKQLVALYQSSFTTTVILPTLVLDVVHKDKSVKVRALLDSGAQRSFIKAKVAKELNLKPCGEAQISHNLFGGVVTKKEVHKAYHVRVKSNDCKYETKIEVLEQDTICKDLPKANGDVIEALQKKGIHLSDNMKETGEVSLLIGADFLGALMTGKVITLKDNLIAIETHFGWSVQGPTASVESVNINVNTSSFDVEDLWKLETVGINDNANTHKANDKEISTFFNSTIRVNEESRYEVKLPWKDAVNLPTNYNLALKRLKSNTKRLTQLGILKDYDQQFQEWKDNSIIEVVNEADPEKDWAKIENETSVMKIKWQFSPPSAPWWGGFWERLVKTVKESLRRILGKASVDAVTLETVLCEVESIVNSRPLSGLSGETDDVAALTPDMFLSGPKMQGTPDLDHVDLHASNKRVVNLRDQLKRRFRSEYLSLLKQSAISGNTSTIEVGDVVLVETQNKRVMWPLARVLEIYEGPDGHKRVAKIKTAHGELISHRAARSFACRSCVARLADAREFKQMVLDSELRFAEMLQPNETQTDLPRTQRSSRSKAKINHVTRKDSKRNSDEELHFEDDIVGGYSSNDMDTFDVKTEETPETSTRRKRKPSDVTSAARTKGEADARNEDWKKLTDRRGNAPILRENSLKLLANSTMCIFQWHKSRYRCFCCNDPFTDMQSLREHTNTSHTLKNIEKKIILQQNRLVKVEISTLDCKICGRPLENLASLKQHLVNEHKLDFTLKEDLLVPFKLNSERLQCQICSENFTVFRHLNIHMNRHYQKQVCHICGAGFSNLVYLNLHKTRSHKPLKCNECQIEFFTRSSKRAHDLTVHNVKLERKLRFPCPFCNERYFQEHLRILHLVEKHGMEKPAHSCSICGKVYVTKSLRNNHLKNVHMKQKNRECDVCHLRFYTKSDLSRHKVTHTGEKNFSCASCNNLYATKDSLNRHVKRTHNTSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -