Yror001450.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- zfy1
- Assembly
- GCA_947308005.1
- Location
- OX371023.1:6279209-6303736[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.6 5.5e+02 1.9 0.4 1 16 253 270 253 272 0.83 2 11 7.2 5.3e+02 2.0 0.4 1 8 283 290 283 291 0.88 3 11 0.00027 0.019 15.9 1.7 2 23 309 331 309 331 0.97 4 11 0.091 6.6 7.9 0.7 2 23 336 358 335 358 0.97 5 11 0.039 2.8 9.1 2.5 1 23 361 383 361 383 0.97 6 11 0.47 34 5.7 0.3 6 23 389 406 389 406 0.94 7 11 0.064 4.7 8.4 2.9 2 22 415 435 414 439 0.91 8 11 0.00013 0.0093 16.9 0.2 2 23 453 475 452 475 0.93 9 11 0.00027 0.019 15.9 0.4 1 23 481 504 481 504 0.97 10 11 4.4e-06 0.00032 21.5 0.2 3 23 516 536 515 536 0.98 11 11 2.3e-05 0.0017 19.3 0.7 1 23 542 565 542 565 0.96
Sequence Information
- Coding Sequence
- ATGAATTTTAACGCAACCCGCGTAAAGGACGAAGTTTTAGGCCAGTTACCTCAGTTCTGCTATGCGTGCTTCAGTGTGGATCGCCGGCTTTATGATGTTGGCGAACTACTCGAAGTTCTAAATAATTTGTTCGAAAATAGTGGCACCGAGTTAGTTTTCAAGTCAGCGCTGCTGTGTTTTGAGTGCCGCGCTATTTTGCGACGTGTGAGTGATTTCAAGAGGAATGTGTCTGCAGTACTGGAATTCTTCTGCAATTACCAGTGTGACCAGAGGTTGCCACCACCGCTGTCGCGATTAGGCGTCGTAAACACCTCCGATGAGATATGCGTCGAACATGAAGTCAAACTGGAACAAGAGGTACAGGAAGACTCTCAGCTCAAGGAAGAGATTGACTTTGAGGAAATAGAGTTCTTGaaggatgagttcacagACGGCGACAGCGATGAGGACTACTGGCAAAACGTTGACCACTCCAGAAAACCTTCACCCAAACCAGCACTATTAGTCGAATTGGATCAACGCTCATCGACGTCCATGCAGCCAGCATCACCACAAACGGAAGAGGACGCGCCGGCGCAAACAGAGAACTGGAACAACACGCTGACAAAACGGAAACGCACGGAACACAAATATATTAGGCTCACTGAACGCAGCCTTTGCCTGGATAAGCTCGTCACAAGATTCTCAGTTAATCACGTGGAGTTGGAGAGGTTGTTTGAGAAGGACAGACAGGACGAGCTATTTTTGGCGTTACCGTATCGGTGTGAAGCCTGCGTCTGCGGATGGAGGCTCAAGAAGAACTTGGACTTACATAATGACAATCGTCATTCTGAAAGCGCGGGCCCCTACCAATGCGATATATGCACAAGAAGAATGGGCTTGAACCGGATATGTCTGCATGTAAAGACGCACTATGTCGCGCGCAAGTGTAATATGTGCGATTATAAAACCGCGACGCAGAGCAGTATGCGGCGGCACATACTGAAGAATCATAATAAAACTGTGGAGTGTCAGACGTGCGGCGCTTTCTTACGTTCAACGCGGGATTTCTACTACCACTATAGAACACTCCATCGGCGTTTCATTTGCGACCATTGCGGCCAGAGCTGTCTAACCCGGGACGCCATCAAGAAACATCTAACAGTCCACGGCCCTTACATCTGCTGCGGTCGCCAGTTCCGTTCCTACCGCGCGTTCAAAGATCACGAGGCGTATCACACAAAAGCTCAGCCCGATCTTTGCTACTGCGTGGAGTGCGACAAACAGTTCAAGAACGTTCTGCGCTTCAGGAAACATCTGAAGACGGCTAAGGCACATAGGGATTCCAGTAAGCAAATAGCCCCCAGGGAGAAGGTACCCTGCCCCGAGTGCGGCAAGGTGTATGCGCGTGCGCACACAATGCGCAACCACTTCAACCTCGAGCACCTCCGGCGCAGTAAATACAAGTGCGAAGAGTGCGACCTGTATCTTCGCGACAGCGCCATGTACAGGCGGCACATGCTTGTGAACCATAAGCCAGGCTGGGAGGCGCCCCGGGACAAGATTTGCCCGGAGTGCGGCCGGGGATTCACCAGGAACGAGATACTGAAGAGACACATCCGTATGCACACAGGCGAGCGGCCCTACAAATGTGTTCTCTGCGACGCGGCGTTCACACAGAGCAGTGGTTTGCAGAAACACGTCAAGCACATACACTTCAAGGAGAATAGGAAGCAGGCGAAAATAAAAAAAAGATTAAAGTGA
- Protein Sequence
- MNFNATRVKDEVLGQLPQFCYACFSVDRRLYDVGELLEVLNNLFENSGTELVFKSALLCFECRAILRRVSDFKRNVSAVLEFFCNYQCDQRLPPPLSRLGVVNTSDEICVEHEVKLEQEVQEDSQLKEEIDFEEIEFLKDEFTDGDSDEDYWQNVDHSRKPSPKPALLVELDQRSSTSMQPASPQTEEDAPAQTENWNNTLTKRKRTEHKYIRLTERSLCLDKLVTRFSVNHVELERLFEKDRQDELFLALPYRCEACVCGWRLKKNLDLHNDNRHSESAGPYQCDICTRRMGLNRICLHVKTHYVARKCNMCDYKTATQSSMRRHILKNHNKTVECQTCGAFLRSTRDFYYHYRTLHRRFICDHCGQSCLTRDAIKKHLTVHGPYICCGRQFRSYRAFKDHEAYHTKAQPDLCYCVECDKQFKNVLRFRKHLKTAKAHRDSSKQIAPREKVPCPECGKVYARAHTMRNHFNLEHLRRSKYKCEECDLYLRDSAMYRRHMLVNHKPGWEAPRDKICPECGRGFTRNEILKRHIRMHTGERPYKCVLCDAAFTQSSGLQKHVKHIHFKENRKQAKIKKRLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01544350;
- 90% Identity
- iTF_01544350;
- 80% Identity
- -