Yror001318.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- zag-1
- Assembly
- GCA_947308005.1
- Location
- OX371023.1:3839281-3846675[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00082 0.06 14.4 2.9 1 23 190 212 190 212 0.95 2 9 0.00038 0.028 15.4 0.7 3 23 247 268 246 268 0.97 3 9 0.023 1.7 9.8 6.1 1 23 271 294 271 294 0.96 4 9 0.0001 0.0073 17.3 1.3 2 23 301 323 300 323 0.96 5 9 0.0075 0.55 11.3 1.2 3 23 336 358 335 358 0.90 6 9 4.6e-05 0.0033 18.3 2.8 1 23 366 389 366 389 0.94 7 9 0.004 0.29 12.2 3.1 1 23 395 418 395 418 0.97 8 9 1.8e-05 0.0013 19.6 0.1 1 23 427 449 427 449 0.97 9 9 0.00068 0.049 14.6 0.1 1 23 455 478 455 478 0.93
Sequence Information
- Coding Sequence
- atgtctatcgggaaaatcaaagagtatgatgtggccaatggcaattgcgacgtgatccgccaacggttgttcgcggaagagaatttgtcctatgctaaggcggtctcccttgcatcagcgctagaagcagcggaaaagaacgcggctgctgtggagTCTAGAGCCGGGCCGGCGAGACATGACGTCGAGCAAGTAAACGCGATGGAGACTCAAGGCAACATGCAGTGTGCCGTGTGCGGCGCGCACGACCATGTAGCGCCCAACTGCAAGTTCAGCAGTTACAGGTGTGGCTGGTGCAACACCATCGGGCACCTACGGCGAGTGTGTCCTCGGCGAGGGCCATCAGTGAGCGCAGCGGCGGCGGCCGCCAAGCCCGGGCCGAGTCGGgcagcgcgtggcggcgggcgcggcacgcggtcccgcggatggcgcggcgggcgccgtcgcggcggcagccaagcggcgcattttgtcgacaccgaccaacaagacgaggaggcggagtcatccgaggaggaggctatatatcaaatgtccttgaaggattacccagcgGAACGGGGAAACTTCAAATGTGAAATCTGCAAGCAGAGATGCAAGGACAGTGCAACGTTGAAACAGCACACGGTGTTACATTATAGAAGCTACGGCTGTCCGCGGTGCCCGCGCACCGACTACAACCTCCACAGAATCACACTGCATTACAAGCAGGTTCACGACGACGTAACCGCGCGCGCATGCAGAAAATGTCCCGCGCGCTTCACCACGGCCCTCGAGCTCAGACGCCACGTCCGAAAAAGGCACGAGAAACACGTGTGCCACCTCTGCAACCGACAGTACACCTCCAAACTCGGCTTAGACCGCCACCTGCGTCATAGTCACACGAAGGTGCGACCGCTCCAGTGCCCCTTCTGCCACAAGACCTACAAAGGCGCCCTGAACTTGAAAGCGCACGTGCGTAATTACCACGAGACTCCGAGCGAACGCAAACGCGAAGACGCTTACTGCGCGGAGTGCGACATACAGTTCAAGGACCAATACAGGTACAAAACGCACCTCAAGTCGTCCAAGCATCTCTCGGACGGCGAGTTCAACTACTGCTGCGACCACTGCGGCAAGACTTACGCGCAAAAGATGAGTTTAATCTCTCACATCGAGGAGAAACACTTGAAGTTGGCCCGGTACAAATGCGACGTCTGCGACGAGAGGTTCCATTCGAAAGCGTACGCGCTGAAGCATTCTCGAAAGAGGCATAGCGACCGGCCGAAGATTAATAAACACGTGTGCGAAATCTGCGAGAAGGCCTTCGCCATACCTAAGTCTCTGAGAGATCATATGAACATCCATAACGGCGTGCGTCCATACGAGTGCGAGCAGTGCGGAGCGACGTTCGCGTATTCGGCCGCCCTATACAACCATAATCAGCTGGTGCACTTGAAAAAGAAGAGGGGGAGCCGGGCCCTAGATTGA
- Protein Sequence
- MSIGKIKEYDVANGNCDVIRQRLFAEENLSYAKAVSLASALEAAEKNAAAVESRAGPARHDVEQVNAMETQGNMQCAVCGAHDHVAPNCKFSSYRCGWCNTIGHLRRVCPRRGPSVSAAAAAAKPGPSRAARGGGRGTRSRGWRGGRRRGGSQAAHFVDTDQQDEEAESSEEEAIYQMSLKDYPAERGNFKCEICKQRCKDSATLKQHTVLHYRSYGCPRCPRTDYNLHRITLHYKQVHDDVTARACRKCPARFTTALELRRHVRKRHEKHVCHLCNRQYTSKLGLDRHLRHSHTKVRPLQCPFCHKTYKGALNLKAHVRNYHETPSERKREDAYCAECDIQFKDQYRYKTHLKSSKHLSDGEFNYCCDHCGKTYAQKMSLISHIEEKHLKLARYKCDVCDERFHSKAYALKHSRKRHSDRPKINKHVCEICEKAFAIPKSLRDHMNIHNGVRPYECEQCGATFAYSAALYNHNQLVHLKKKRGSRALD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -