Yror001184.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- ZFX
- Assembly
- GCA_947308005.1
- Location
- OX371023.1:1441296-1461347[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6 4.4e+02 2.2 3.7 2 23 119 141 118 141 0.95 2 10 0.00079 0.058 14.4 0.2 1 23 148 170 148 170 0.99 3 10 0.056 4.1 8.6 0.4 1 20 174 193 174 196 0.95 4 10 0.035 2.5 9.3 1.8 1 23 204 226 204 226 0.94 5 10 4.5e-06 0.00033 21.5 1.5 2 23 231 253 231 253 0.97 6 10 9.1e-05 0.0066 17.4 0.9 1 23 259 281 259 281 0.97 7 10 5.1e-05 0.0037 18.2 3.0 1 23 325 348 325 348 0.94 8 10 0.00031 0.023 15.7 4.4 1 23 353 376 353 376 0.97 9 10 2.7e-06 0.0002 22.2 3.6 2 23 384 405 383 405 0.97 10 10 2e-06 0.00014 22.6 1.6 1 23 411 434 411 434 0.96
Sequence Information
- Coding Sequence
- ATGATTCAAGAAGTAAAGCAAGAGCGACCGCTGTCCGACGCCGAGAACCGATCCTGCACCTCGGACTGTTCCGAAGACATCGACCGCTTAGAGGCCGAGGTCAATACCGTGTTGGGGCAAGAGCGTCTCTTAGCAGGAGATAAGCCTCTTTCAGAGGAAGATAGTGGCAAAAAGAAAAGGAGCGTGAAAGCGGACAAAGGGAAAAAGGTGCAGAAGACTGAAAAAAGCGCGAAGAAGGTGAAAAAGAAACCGGCCGCCAAGCAGAAGATAATCACCGTAGACCTCTCCGTCGCGGAGATAGAGGCGGAGAGGGCGCGCGACGCCGCAAGGGAGGTGTTCACACGCGCCCAGTGGCGCTGCGACACTTGCCTCGTCCACTTCAGCTGCCGCGGGACTTTCGCGCAACACATGGATACCAAGCATAACTCTGAACTCGGAAACTACACCTGTCCCGTATGTAAGACGGTCGTTGCGTCTGTCGAGTCTTTCACAGCGCACTACAAGAGACATCGGAGAAGGTACGAGTGTGGCGCGTGCGGGAAGCGTACGGCGGATCGCAAGGCGATGCGACAACATTATGAGTGCACACACGAGCCCAAGAGACGCCAGTACACGTGCAAGGACTGCGGGACTGTCTCCAAATCAGCGGACGCGCATCGGTACCACCGCGAGAAGCACAGAGCTCGGGCGCAGTGCTCCGAGTGTGACAAGAGCTTCAGCCACCGCGCGGGACTCATGAACCATCGGCTCACGGTTCATAAGCTGAACAATGCGTTTCCGTGCTCCGCGTGCGATAAAGTGTTCCGATGGAAGACCAGCCTTAAGAAGCACATGGAGAAACATACTAGAAAGGACCCGGCGGGTGCCCGGCCCGCGCACTGCGAGCCGTGCGATGTGCACTTCGCGAGCGTATGCAGCTACCAGCGGCACCTGCGGCACAGTCTGCGGCACGTCACGCCGGAACAGCACAAGTTCATCTGCGACCACTGCGGCCGCCACTTCGCTAACAAGACGAAACTGCGAGACCACATTGAGGAGAAACATCTGCTGAAGACTTACCAGTGTCACATCTGTCAGAAGCCTTCGAAGAACCGCTCGTGCCTCGACCAGCATCTGCGAAACGTCCACAAAGGACGGCCCAACAACAAAATGTGCCATCACTGCGGGAAGGGGTTTCCGACGAAAATGCAGCTGGAATCCCACATTCGATCGCACACGGGCGAGCGTCCTTTCATCTGCGAGTTTTGCCCCACCACCTTCAGCCAGCAGTCCAACCTTTACAAGCATTATCGGCAGATCCATCTGAACATCAAAACGAAGCGCTACGCGATCGCCAGCAAAAAGGGCAAGAGCGGAACTCAAACCGACGCCCCCGCGATGCCCGCGCCACTGGCCAACCACACGACCGTAGCCGTTCTCACATACAATCAGGATAAACAGTTCGTCGTGCAATATGATGGTGTAAATAATGTAACTATAGTTTAG
- Protein Sequence
- MIQEVKQERPLSDAENRSCTSDCSEDIDRLEAEVNTVLGQERLLAGDKPLSEEDSGKKKRSVKADKGKKVQKTEKSAKKVKKKPAAKQKIITVDLSVAEIEAERARDAAREVFTRAQWRCDTCLVHFSCRGTFAQHMDTKHNSELGNYTCPVCKTVVASVESFTAHYKRHRRRYECGACGKRTADRKAMRQHYECTHEPKRRQYTCKDCGTVSKSADAHRYHREKHRARAQCSECDKSFSHRAGLMNHRLTVHKLNNAFPCSACDKVFRWKTSLKKHMEKHTRKDPAGARPAHCEPCDVHFASVCSYQRHLRHSLRHVTPEQHKFICDHCGRHFANKTKLRDHIEEKHLLKTYQCHICQKPSKNRSCLDQHLRNVHKGRPNNKMCHHCGKGFPTKMQLESHIRSHTGERPFICEFCPTTFSQQSNLYKHYRQIHLNIKTKRYAIASKKGKSGTQTDAPAMPAPLANHTTVAVLTYNQDKQFVVQYDGVNNVTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -