Basic Information

Insect: Yponomeuta rorrellus
Gene Symbol: -
Assembly: GCA_947308005.1
Location: OX371006.1:16303448-16319729[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.76 55 5.1 0.1 3 23 113 133 111 133 0.96

2 19 1.1 78 4.6 0.1 2 23 137 159 136 159 0.93

3 19 5.8 4.2e+02 2.3 3.7 3 23 164 185 162 185 0.92

4 19 0.023 1.7 9.8 1.5 2 23 391 413 390 413 0.95

5 19 0.17 12 7.1 0.2 1 19 421 439 421 441 0.95

6 19 0.027 2 9.6 0.4 2 23 452 473 451 473 0.94

7 19 0.011 0.8 10.8 1.7 1 23 521 544 521 544 0.96

8 19 0.73 53 5.1 0.2 8 23 594 610 591 610 0.94

9 19 9.9 7.2e+02 1.5 2.0 3 14 623 634 621 644 0.78

10 19 1.3 96 4.3 2.1 1 23 649 672 649 672 0.93

11 19 2.8e-05 0.002 19.0 0.2 1 23 678 700 678 700 0.93

12 19 4.2e-05 0.0031 18.4 2.9 1 23 707 729 707 729 0.98

13 19 9.6e-05 0.007 17.3 2.3 1 23 734 756 734 756 0.96

14 19 0.0005 0.036 15.1 3.0 1 23 762 784 762 784 0.99

15 19 3.6e-06 0.00026 21.8 1.4 1 23 790 812 790 812 0.98

16 19 0.0017 0.12 13.4 1.7 2 23 819 840 819 840 0.98

17 19 0.0041 0.3 12.2 0.8 3 23 850 871 850 871 0.97

18 19 1.9e-05 0.0014 19.5 0.2 1 23 876 898 876 898 0.98

19 19 1.7e-06 0.00012 22.9 2.2 1 23 904 927 904 927 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.76	55	5.1	0.1	3	23	113	133	111	133	0.96
2	19	1.1	78	4.6	0.1	2	23	137	159	136	159	0.93
3	19	5.8	4.2e+02	2.3	3.7	3	23	164	185	162	185	0.92
4	19	0.023	1.7	9.8	1.5	2	23	391	413	390	413	0.95
5	19	0.17	12	7.1	0.2	1	19	421	439	421	441	0.95
6	19	0.027	2	9.6	0.4	2	23	452	473	451	473	0.94
7	19	0.011	0.8	10.8	1.7	1	23	521	544	521	544	0.96
8	19	0.73	53	5.1	0.2	8	23	594	610	591	610	0.94
9	19	9.9	7.2e+02	1.5	2.0	3	14	623	634	621	644	0.78
10	19	1.3	96	4.3	2.1	1	23	649	672	649	672	0.93
11	19	2.8e-05	0.002	19.0	0.2	1	23	678	700	678	700	0.93
12	19	4.2e-05	0.0031	18.4	2.9	1	23	707	729	707	729	0.98
13	19	9.6e-05	0.007	17.3	2.3	1	23	734	756	734	756	0.96
14	19	0.0005	0.036	15.1	3.0	1	23	762	784	762	784	0.99
15	19	3.6e-06	0.00026	21.8	1.4	1	23	790	812	790	812	0.98
16	19	0.0017	0.12	13.4	1.7	2	23	819	840	819	840	0.98
17	19	0.0041	0.3	12.2	0.8	3	23	850	871	850	871	0.97
18	19	1.9e-05	0.0014	19.5	0.2	1	23	876	898	876	898	0.98
19	19	1.7e-06	0.00012	22.9	2.2	1	23	904	927	904	927	0.98

Sequence Information

Coding Sequence: ATGTCTTCAGATGAATCAGACGATGAACCACTGGCTGTGTTAGCGTCCTTCAAAAAACAGAACCCAGATGTGTTTCCTGAACCCGAGTCAGAGGCTATTGTGAAAATACCAAAAAAGCGAAAGAAGAAGAAAATTAAGGAAGCATCATCTACGAAGTTAAGCTCCAAGCTGAAAGCAATTATTTCTCCACCTGTGATACAAAGACCCGAGGATGTATGGCTGTACATGAAAGATTTTAATCAAAATGGACCATACAGCTGTTTGCTATGCGCTGAATGGTTCATCAATAGATCCAAAATCATCGTACACTATATCTTGAATCACAAGAAGGACTTCTGTGGCATTTGCAGATATTTTGTACCAGACAGAGAAGCTTGGGTGTCTCATATGAAGTTCCACATACCATGGAAGTGCTCACAATGCATTGAGGAATTTGAGACTGAAGTTGAACTTCAGGAGCATTTCAGCCGTGAACATCAACTGGTTCATTGCCGCTATTGCCATTTCCGAATGCCAGATAATGATGAGTACAACCGCCATCTGTACAACAAACATAATGTAACAAATGTGACCTGCAAAAATGTGGAAACACTCTGGGAATCCGAGAATGATGGTATTCCTAAGTTCCTGTGTCTACTCTGTTCTAAATCCAACAACCAGTCTTCGAATTTCTTTAATCACTACATGTGTTTCCACCGAATAACCCTCAAATGTTTCTCAAAGATGATCTCGGGGCGTGACCCTGAATTTTCAGTCTATGGAGCCAATATTAGTGTCGATTTTTTGGAGAGTCAGTTGAAAGATCAAGATAAGTTTGGATATGTTGATACTGACACTAAGCCACCTGCGCAACATGATACTCTCCAGAACACAGAAACCGATGCTTTGCTAGATGCACTAGTCCCTGAAATAAAGCAAGAAGTACAGAGTGATTCGGAAGAAGTGGTTGAAGTCCCTAAAAAGAGGAGAAGAAGATATAATCCTGGAGAACAAGGTATCTGGGACACATATGAAGGTGTAGAAGATTTTGATATTACTTTGACAGAGATTATTATGCTTCAAACATGCTATTTTGACTATGTCAATGAACTGAAAAGCTGCATCGAATCAAAAACAGTGCCAGAAATCTCAGACATAGACTATGAGAGTATCAAACCTGATCAGGTCACAACCTGTCTGGTCTGTTCGTACAAGTTCAACACTACCACTGAGTTCGCAACACATATGACTAAAATGCATGGTGTCAAAACTGTACCCACATTCTTCTGCAGGGTGTGTGCGACAACTTTTGACACTTTGAATGATCTAACAACACATGCTGTGGAAGAATTGGGTGAGTTTGAAGATCTATGGATCTGTCAGTTTTGTGACAAAGAGTTTGAGTCCAGGGCGGCAACTAGGCAGCACTTAACCCAGCACTGGGAAGACCTGGAGTTGGAGAACTGTTTCAGTCCGCATTTGGGCTTCAAATGTATGTACTGCCCTACCTTGTTTTGGAATGAGCCAGACAGAGAGGGACACCAGAAGCGCGTACATTTCAGCAAACGCAAAGAGGATTTCTACAAGTGCGAAATATGTCTAGAGCTGTTTAGTGACAAGGTGTGGTTCACCCATCACTACATGGAAAAACACCTAACGGAGGTGGACGATTGCAAGCTCTTGCTGAAGTGCAGCCTCTGCGCACTGGTGCTCACCAGCGTGGAGACGATGCGGGTGCATTTCACCTCGGAACATGCCGATGCGAAGAAGATATTTTGCTCCCTCGATTCTTGCGCCTTCAAGCCTTTTGCACAGAAGAAGTCCTTTAAGATTCATTTGAAGTCGGTGCACAGACCCAACGCTCGCGAGTCGACGGGCAAAGTGAACTGCCAGCTGTGCGGCCGCGAGTTTGAGAGCGCACGCGCATGCAACTGCCACATGTCGCAAGTGCACGGTCCTGGTCGGTTCAAGTGCAAGCTGTGCCACGCGTTCCTCAACACTGCTGATGAGCGAAAGCTCCACTACCTCCTTCAGCACCCAGGCCGCCACCACTTCGATTGCGCCGACTGCGGCAAATCGTTCCCGTACAAGTCATCTCTCTATGCGCACCGCGTCGAGCACAATACGGATCGGCGGCCCTACGTTTGCAGCCACTGTAACAAGTCGTTTATGAAAAAGGACTCTTACAAGGAGCACATTCTGATCCACGAGGGCCCGCGGCACGCCTGCTCGTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGGCGGCACACGGGCGAGCGGCCCTACACCTGCCACTACTGCCCTGCCACCTTCGCGGACAAGGGCGCTTGCAGCTCGCACATGAGAACACACTCGAAAGATACGTCTTACCCCTGCCTGTACTGCGGCCAGACCTTTGTGCAGAAGTCGAAGCTCACATATCACGTGCGGAAGCATACAGGGGAAAATTTGGAAACATGTCCCGTGTGCTCGAAGCTGTTCACGAGTGGATGCTCGTTGCGGGAACACATGAAGATTCACACCAAGAACAAAGACGCGAAGGTCGGCTGCCCCCTCTGCAAAAAATACTTCCAAGACGAGCGCAACATGATCCGCCATCTCCGCGCCAGACACAACCAGGCCGGCTACAACTGTCCGATTTGCGACAAGAAACTAGCCAGCTCTTACAGTCTGCGACAGCATGTCATCACGCACAGCGCCATGAAAACTTACCAGTGCAAAAAGTGCCCGAAATCCTTCGTCGTGAAGCGCTCCCTTCTGAAGCACATCCGGCGCCGTCACAACATCGCTCTCGAAGGCAACGAGAAGAACATCTCAGACTACATAAGAACAATGGATGCGAGGCAGTGCAAACTCGGCCTGGACGAAGAGATGCTGACCACCATCTTCGGTCCGCCGAAGAATGTCAACGATGACGTCCTCTTGGAGAACGTGGTGACTTTCCCGGACAAGTCTAAGGGTGATGCAGAGAAAAGTGATGATGATGAGGATGATGAGAAGACGGGCGATGAGTCGGAGTCTGGTGATGATGTAGAGGTGAGGAAACCGTTGGAGGTGAATGTGCAGGTCAAGAAAGAGCTGGGGAGTGAACCGGAGACTGAGTTGGAGCCGACGGATTTTGTTAGTGTAAAGATAGAGCCTTTGGACGAGGCAGAGCTAGACAGTGATGAATGA
Protein Sequence: MSSDESDDEPLAVLASFKKQNPDVFPEPESEAIVKIPKKRKKKKIKEASSTKLSSKLKAIISPPVIQRPEDVWLYMKDFNQNGPYSCLLCAEWFINRSKIIVHYILNHKKDFCGICRYFVPDREAWVSHMKFHIPWKCSQCIEEFETEVELQEHFSREHQLVHCRYCHFRMPDNDEYNRHLYNKHNVTNVTCKNVETLWESENDGIPKFLCLLCSKSNNQSSNFFNHYMCFHRITLKCFSKMISGRDPEFSVYGANISVDFLESQLKDQDKFGYVDTDTKPPAQHDTLQNTETDALLDALVPEIKQEVQSDSEEVVEVPKKRRRRYNPGEQGIWDTYEGVEDFDITLTEIIMLQTCYFDYVNELKSCIESKTVPEISDIDYESIKPDQVTTCLVCSYKFNTTTEFATHMTKMHGVKTVPTFFCRVCATTFDTLNDLTTHAVEELGEFEDLWICQFCDKEFESRAATRQHLTQHWEDLELENCFSPHLGFKCMYCPTLFWNEPDREGHQKRVHFSKRKEDFYKCEICLELFSDKVWFTHHYMEKHLTEVDDCKLLLKCSLCALVLTSVETMRVHFTSEHADAKKIFCSLDSCAFKPFAQKKSFKIHLKSVHRPNARESTGKVNCQLCGREFESARACNCHMSQVHGPGRFKCKLCHAFLNTADERKLHYLLQHPGRHHFDCADCGKSFPYKSSLYAHRVEHNTDRRPYVCSHCNKSFMKKDSYKEHILIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYTCHYCPATFADKGACSSHMRTHSKDTSYPCLYCGQTFVQKSKLTYHVRKHTGENLETCPVCSKLFTSGCSLREHMKIHTKNKDAKVGCPLCKKYFQDERNMIRHLRARHNQAGYNCPICDKKLASSYSLRQHVITHSAMKTYQCKKCPKSFVVKRSLLKHIRRRHNIALEGNEKNISDYIRTMDARQCKLGLDEEMLTTIFGPPKNVNDDVLLENVVTFPDKSKGDAEKSDDDEDDEKTGDESESGDDVEVRKPLEVNVQVKKELGSEPETELEPTDFVSVKIEPLDEAELDSDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01545100;
90% Identity: iTF_01545975;
80% Identity: -