Yror007719.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- -
- Assembly
- GCA_947308005.1
- Location
- OX371022.1:7415373-7417800[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.013 0.97 10.6 0.1 2 23 31 53 30 53 0.91 2 17 0.013 0.96 10.6 2.0 1 23 101 124 101 124 0.96 3 17 0.39 28 6.0 0.0 1 19 129 147 129 150 0.81 4 17 7.9 5.7e+02 1.8 0.4 1 13 157 169 157 175 0.76 5 17 0.021 1.5 10.0 0.2 1 23 187 210 187 210 0.93 6 17 0.0002 0.014 16.3 0.5 2 20 217 235 217 238 0.92 7 17 0.00018 0.013 16.5 0.6 1 20 244 263 244 266 0.94 8 17 0.013 0.98 10.6 3.3 1 23 272 295 272 295 0.95 9 17 0.0072 0.52 11.4 0.6 3 23 362 383 361 383 0.97 10 17 8.6 6.3e+02 1.7 0.0 2 23 454 475 453 475 0.84 11 17 0.00065 0.047 14.7 0.5 1 23 479 502 479 502 0.96 12 17 0.011 0.79 10.9 0.4 1 20 507 526 507 528 0.94 13 17 0.11 7.7 7.7 1.5 1 23 535 558 535 558 0.88 14 17 0.0001 0.0076 17.2 2.9 1 23 565 588 565 588 0.93 15 17 1.1 78 4.6 5.9 2 20 595 613 594 616 0.93 16 17 7e-07 5.1e-05 24.0 1.2 2 23 624 645 623 645 0.97 17 17 4.2e-06 0.0003 21.6 4.5 1 23 648 670 648 670 0.98
Sequence Information
- Coding Sequence
- ATGAAAGACCGCCACGAGCCATTCAATCTCTACACGGCATTCAGTCATGTGTCCAAAAATAACTACATAAAACTCGATTGCACGGAGGTCTCCTGCAGAATCTGCGGAAAAGAGATCGAAAACCCGAGCGATATAAAGAAACATCTTGAGGATGATCACGCAATAAAATTTATAGAGGAGGCGGGCTTGCACTGGTTTCCGTACAGATTTGTCAATTCACAGCTGATTTGCGGAATATGCGCAGAGAACAAACCCGGTCTCAAACAGTTGAGCACTCATTTAACTGAGCATTACAGTAACTTCGTCTGCCTCATTTGTCATAAGTCGTATATTTCCGAAACTGCTTTGCGGTGTCATCTGAAGGTCGGCCACCCTTCGGAAAAGTATCCTTGTCCGAAGTGTAAACTGCCGTTCCCAACGTTGTTAGCTCGGCGAGAGCACGTTTTGAATTCAACCGCTTGCTGGCGATATCGCTGCCAATATTGTGAAGACCGATTTGAATCTTACGGTGCGAAAGAAATGCATTGTGTTGAGAAACATGGCATGTCTAAAAAGACCTATCCTTGTACTGAATGCGCGCAGGTCTTTCCTAGAGCCCAAGTCTATAGGAAGCATTTCATGCTGCTTCACAGCAAGAGCGGTTTCGAAGTCTGCGTCCATTGCGGGAAGCGATTCGACAGCAAACGATCCTTAGAGGCTCACTTGCCTGTTCACACCAAGGAGAAACAATTCAAATGTCCCGTTTGTCAAAAGTATTTTGCCAGGCGGAAGAGTTTAGGGCAGCACATGTGGATACACAGGGAAGAGAAGCGATATCAGTGTGTGCCCTGCAATCGGAAATTCACACAGAAAACCTGCTGGAAGATCCATATGAAAGCGCGTCATCCCGATGTCAAGCTTGAATTAATTAATACGCAAACTCCTGTCATCTTTGATTTACCAAAAGAGGATACAAGGACAGATGTTAACCCTGACAAAGGAAAAAACACAGCTTACAATAAACTGTTAAACGTGGAGAACGCGCAGTTGATCGTGAAACACACGACGGTTTACCCATTCCAACTGCGGTCAAGCACTATGCTTTGCCTATTCTGCACTGAGAGGTACGTCGACCTCGCAGAGTTCAGAAATCACATGAAAACTCAACACGAACCTTTCAACTTGAAAAGGGCGTTCCGACACGTGTCCAAAACCAATTACATTAAAGTCGACTGCACCGAGTTGTCATGCAGACTCTGCCCGCTAAAGATAGCAACGCCGAATGACATCCCGAGACATCTTGAAGAACAGCACGACATAAAATTCATATCTGATGCCGGTATAGCGTGGTTCCCGTACAGATTTGTCAACGAAAAACTGGTCTGCGGAATCTGTGATGTTAATAAACCAGGACTCAGGCAGCTTAGTATACACATCGCGACGCATTATAAGAACTATACATGTGACGCGTGTGGAAAGTCTTACATGGTCAAATCTTCATTGCTCTCACATTACAGCATCAGACACGCGGAAGAAAGGTATCCCTGCACGAGATGTAGGAGAACTTTCAAAACTAGCCAGGCAAGAAGAGAACACATAGCTAACTCGAAACCCTGTTGGCAGTACATGTGTAAAATCTGCAAGACTCGCTTCGAGACCTATCGATTGAAAGTCGCTCATCACATAGAGATCCACGGGGAGTCTAGAAGGACTTATCCTTGTACGGAATGCGATAAAGTGTTTGAAAAACCCGCCCATTACAGAAAACACTTCAAATTCACGCACAGTACAACTGATTTTGATACTTGTTCCCACTGCTGGAAACGATTTGACTGTAAACGGGATTTAGAGGATCATATGATCTGCCATACTAAAGGGGGCTTAGATTTAAAATGTCCAACTTGCTTTAAAACGTTCGCAAGGCCGAAAAGCTTAAGCCGTCATATGTTGACACATATCGGGTTCCAATGTAACGTGTGCGGCAAGAAATACAAGCAGAAATCTTTTTACAAAAATCATATGAAAAATCACCAATGA
- Protein Sequence
- MKDRHEPFNLYTAFSHVSKNNYIKLDCTEVSCRICGKEIENPSDIKKHLEDDHAIKFIEEAGLHWFPYRFVNSQLICGICAENKPGLKQLSTHLTEHYSNFVCLICHKSYISETALRCHLKVGHPSEKYPCPKCKLPFPTLLARREHVLNSTACWRYRCQYCEDRFESYGAKEMHCVEKHGMSKKTYPCTECAQVFPRAQVYRKHFMLLHSKSGFEVCVHCGKRFDSKRSLEAHLPVHTKEKQFKCPVCQKYFARRKSLGQHMWIHREEKRYQCVPCNRKFTQKTCWKIHMKARHPDVKLELINTQTPVIFDLPKEDTRTDVNPDKGKNTAYNKLLNVENAQLIVKHTTVYPFQLRSSTMLCLFCTERYVDLAEFRNHMKTQHEPFNLKRAFRHVSKTNYIKVDCTELSCRLCPLKIATPNDIPRHLEEQHDIKFISDAGIAWFPYRFVNEKLVCGICDVNKPGLRQLSIHIATHYKNYTCDACGKSYMVKSSLLSHYSIRHAEERYPCTRCRRTFKTSQARREHIANSKPCWQYMCKICKTRFETYRLKVAHHIEIHGESRRTYPCTECDKVFEKPAHYRKHFKFTHSTTDFDTCSHCWKRFDCKRDLEDHMICHTKGGLDLKCPTCFKTFARPKSLSRHMLTHIGFQCNVCGKKYKQKSFYKNHMKNHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01544185;
- 90% Identity
- iTF_01544185;
- 80% Identity
- -