Basic Information

Insect: Yponomeuta rorrellus
Gene Symbol: -
Assembly: GCA_947308005.1
Location: OX371011.1:7420694-7444834[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00083 0.06 14.4 0.2 2 23 5 27 4 27 0.94

2 12 0.00015 0.011 16.7 0.2 1 21 31 51 31 52 0.95

3 12 0.18 13 7.0 0.3 1 12 205 216 205 225 0.86

4 12 2e-05 0.0014 19.5 0.4 1 23 395 417 395 417 0.99

5 12 3.4e-05 0.0024 18.8 1.3 1 23 452 474 452 474 0.99

6 12 2.2e-06 0.00016 22.5 1.3 1 23 527 549 527 549 0.97

7 12 0.0012 0.089 13.8 2.2 1 23 565 587 565 587 0.98

8 12 1.6e-06 0.00012 22.9 4.5 1 23 593 615 593 615 0.98

9 12 0.0041 0.3 12.2 6.4 1 23 621 643 621 643 0.97

10 12 2.2e-06 0.00016 22.5 0.4 1 23 649 671 649 671 0.98

11 12 0.00051 0.037 15.0 0.4 1 23 675 697 675 697 0.97

12 12 2.7e-05 0.002 19.0 0.2 1 23 705 728 705 728 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00083	0.06	14.4	0.2	2	23	5	27	4	27	0.94
2	12	0.00015	0.011	16.7	0.2	1	21	31	51	31	52	0.95
3	12	0.18	13	7.0	0.3	1	12	205	216	205	225	0.86
4	12	2e-05	0.0014	19.5	0.4	1	23	395	417	395	417	0.99
5	12	3.4e-05	0.0024	18.8	1.3	1	23	452	474	452	474	0.99
6	12	2.2e-06	0.00016	22.5	1.3	1	23	527	549	527	549	0.97
7	12	0.0012	0.089	13.8	2.2	1	23	565	587	565	587	0.98
8	12	1.6e-06	0.00012	22.9	4.5	1	23	593	615	593	615	0.98
9	12	0.0041	0.3	12.2	6.4	1	23	621	643	621	643	0.97
10	12	2.2e-06	0.00016	22.5	0.4	1	23	649	671	649	671	0.98
11	12	0.00051	0.037	15.0	0.4	1	23	675	697	675	697	0.97
12	12	2.7e-05	0.002	19.0	0.2	1	23	705	728	705	728	0.97

Sequence Information

Coding Sequence: ATGAACAAAATGAGATGCCCCCTTTCCTGCGGCCAAACATTTAACACCAAAAACGAACTAATTGAACACTTGTCTGATCATGTAGTAGAGTTTAACTGTCCAATATGCCAGACCTCTTATTCATCTATTTCCAATCTATTGAATCATCTGAAACTGACCACATGTAGACCATCAGCCAACTTCAGCGTGACATCAGCTGATACATCGCTTAATGAAATTGCACAAGTTGAGCCTAACAAAAACTATGATGTCCCTATTATTGCGCCTAAACTTGAACATACTCAAGGTAACTCGAACAGTGATATTGATGACTGCAAATACAAATCTGACATTACAAAAGAAGACAATGACTTGACGGAGCTTCAAGAAGCCACTTTAGAAGATGCTAATATGTATGAGGAACTACTAGAGAAGGATGGCTTGCAAGGGTCAGATCTCAATCTGCTGGATGAGAATGGGCATAACCGATACACCATTGTGACCCATGATGGCACTATTTCCATCACTAGTGCCAAAGATAATCAGGAAGATGCTAGTCAGATGAAGTTAGAAGATATAGAGCCAGTAATCACAGTAGCTGATAAGGATCCGGAGTCCAATGAACAGGAGGTTTACAGCTGCAACACCTGTGGTGTCTCCTTCTCGTCAGTCCTGGATCACATACAGAACTACCATAAGGATCAAGATGTAGTGGTTGAGGTAAATGAGCAGAGTCAGAACGGCGACGGCAATGAGAGCCTCGAGGAAGACAAGGAGACCGTTATAGAAGTGCAGCCTGTCGACTCTGTAACTTCCAAGGAGGAATCAACGGAGACTGCAGAGACACAGACCACGAGGCGCGTCATCACTGACACGGGCGATATAGTGGAGACTGCCACCGAGCTCTTAGAAGTTGCAGGCGACACTGCGAAGTCTATACCCCTGTCTCTGCTGGAAGAAGAGGTCCTAGACAAGAAAGGCCGCGTCTTCACCAGACGCTACGTGCAGATTGGCAAGCTCAACCGGACTGAGCCCGAGGCTGAAGAGCCCACGCAACCAAAGGTACCCTACCACCAAGTGGTGGTCAAGGAGATTATGACGATGGACGGAGGGGCCAAAGTGAAGGTGTACAACTGCGTCTCGTGCCAGATCTATGTCATGAACCTTGACGAGTTCAAATCCCACCCTTGCAAAGCGCTGAAGTACACGTGCCCGCAATGCCCCGTTTCGTACGGCAATGCCAAGTCGCTCTGCGCTCATATGAAGGTGCACAAAGTGACCAGGCAGACCTTCAGCGCTAAATCGCCCGCGGTGCCACCCATCGAGATCATGGAGCCAATTACCGTGTACCCACCGGAGAGCCGCACGTTGCCGTATAAGTGTGATGTTTGCTCCACCATATTCCCCACGAATAAGTCATTGAAGCTTCACAAAAGGATGCATGATCCAATTAAGTCCCGCCCCATTGAGCCACCGGTCGAAGAGAGCAGCGACCCGACAGAAGACTCCTCAGAGAAATACTTCTGTGCGCATTGCAACAAGTGGATCCCCGTCGGCTACCGCACCGTCCACAACAACTTTCATAAGAGCACGGAGAATTTCAACTGCGACATCTGCAACAAGAAATTTACTTCCAGCAGCTACCTGCTCATGCATATGACTGTGCATAATACTGACAAGGTAAAAGTGAAGAAGTTGGACAAAACTCTCCCTTACACATGCCTTTACTGCAACCGGCAGTTCGCGAGACCGCACGAAAAGGTCAAGCACGAGAGGATACACACAGGTGAAAAGCCGCACTCGTGTGAGATATGCGGAAAGTCGTTCCGCGTGTCGTACTGTCTCACGCTGCATATGAGGACGCACACTGGCGCGAGACCGTACGCCTGCCAGCATTGCGGGAAAAGGTTCAAAGCTCACAGCGTGTACAACCACCACCTACTGACTCACTCGGACGTGCGCGCCTACAAGTGTCCCTACTGTCCCAAGGCGTTCAAGACCTCGGTCCAGCTGGCTGGACACAAGAACTCGCACACCAAGCCCTTCGCCTGCGAACACTGCAACAGGCCGTTCGCGTCCCTATACGCGGTGCGTGTCCACACGGAGACGCACCGGCGGCAGAACAGCCTCAAGTACAACTGCGAGACGTGCGGCGCCAGCTACGCGCGCTCCTTCGCGCTTAAAGACCACATGCGCCAAGCCCACCAGCAGGAACTCAGGCCGGCCGACGCGTTCGACAGCGTGTCATCAGTGACTCTAGTCGAAGAAAAGGACTGGGCGCTGGAAAACACCGAGGAGTCGACTGCGCCCGCGCATAAAGAAGATTTCCAAGAGGTCAGTATACGCAGGACGATACGAAAGAGGAAAGTAGCGTACGAAGATTCAGACTAG
Protein Sequence: MNKMRCPLSCGQTFNTKNELIEHLSDHVVEFNCPICQTSYSSISNLLNHLKLTTCRPSANFSVTSADTSLNEIAQVEPNKNYDVPIIAPKLEHTQGNSNSDIDDCKYKSDITKEDNDLTELQEATLEDANMYEELLEKDGLQGSDLNLLDENGHNRYTIVTHDGTISITSAKDNQEDASQMKLEDIEPVITVADKDPESNEQEVYSCNTCGVSFSSVLDHIQNYHKDQDVVVEVNEQSQNGDGNESLEEDKETVIEVQPVDSVTSKEESTETAETQTTRRVITDTGDIVETATELLEVAGDTAKSIPLSLLEEEVLDKKGRVFTRRYVQIGKLNRTEPEAEEPTQPKVPYHQVVVKEIMTMDGGAKVKVYNCVSCQIYVMNLDEFKSHPCKALKYTCPQCPVSYGNAKSLCAHMKVHKVTRQTFSAKSPAVPPIEIMEPITVYPPESRTLPYKCDVCSTIFPTNKSLKLHKRMHDPIKSRPIEPPVEESSDPTEDSSEKYFCAHCNKWIPVGYRTVHNNFHKSTENFNCDICNKKFTSSSYLLMHMTVHNTDKVKVKKLDKTLPYTCLYCNRQFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACQHCGKRFKAHSVYNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFACEHCNRPFASLYAVRVHTETHRRQNSLKYNCETCGASYARSFALKDHMRQAHQQELRPADAFDSVSSVTLVEEKDWALENTEESTAPAHKEDFQEVSIRRTIRKRKVAYEDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01544163;
90% Identity: iTF_01544163;
80% Identity: -