Yror007681.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- -
- Assembly
- GCA_947308005.1
- Location
- OX371022.1:7090845-7094916[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 1.6 1.2e+02 4.0 3.8 2 23 82 104 81 104 0.89 2 31 2 1.5e+02 3.7 1.3 2 23 125 147 124 147 0.94 3 31 0.17 12 7.1 2.5 2 23 153 175 152 176 0.93 4 31 0.31 23 6.2 1.3 1 19 180 198 180 203 0.83 5 31 0.097 7 7.9 0.9 2 23 206 228 205 228 0.95 6 31 0.0045 0.33 12.1 0.7 2 22 232 252 231 252 0.94 7 31 0.0023 0.17 13.0 0.5 1 23 296 319 296 319 0.96 8 31 0.11 7.8 7.7 0.1 2 23 347 369 346 369 0.94 9 31 0.00082 0.06 14.4 0.1 2 23 392 414 391 414 0.95 10 31 0.00021 0.016 16.2 0.4 3 23 421 442 419 442 0.94 11 31 0.32 23 6.2 1.2 5 23 450 469 447 469 0.94 12 31 0.13 9.7 7.4 3.0 1 23 474 497 474 497 0.97 13 31 0.00017 0.012 16.6 5.1 1 23 501 524 501 524 0.97 14 31 7.7e-05 0.0056 17.6 0.7 2 23 531 552 530 552 0.97 15 31 0.021 1.6 9.9 0.8 1 23 558 580 558 580 0.96 16 31 9.8 7.1e+02 1.5 0.3 3 23 610 629 609 629 0.78 17 31 0.63 45 5.3 0.3 2 23 657 679 656 679 0.89 18 31 0.01 0.74 10.9 0.5 3 23 701 722 699 722 0.92 19 31 0.00015 0.011 16.7 3.5 2 23 728 750 727 750 0.94 20 31 0.013 0.96 10.6 1.1 1 20 755 774 755 778 0.90 21 31 0.0071 0.52 11.4 0.5 2 23 781 803 780 803 0.92 22 31 0.15 11 7.3 1.2 2 19 810 827 809 830 0.92 23 31 0.0018 0.13 13.3 0.4 1 23 877 900 877 900 0.96 24 31 6 4.4e+02 2.2 0.0 2 23 928 950 927 950 0.92 25 31 5.8 4.2e+02 2.3 0.2 1 23 972 997 972 997 0.84 26 31 0.00046 0.034 15.2 2.8 3 23 1004 1024 1002 1025 0.93 27 31 0.0013 0.092 13.8 1.8 1 23 1030 1053 1030 1053 0.96 28 31 0.0037 0.27 12.3 0.1 2 23 1059 1081 1058 1081 0.93 29 31 6.9e-05 0.005 17.8 3.5 2 23 1086 1108 1086 1108 0.97 30 31 0.00063 0.046 14.7 0.4 2 23 1115 1136 1114 1136 0.96 31 31 0.019 1.4 10.1 1.6 1 23 1142 1164 1142 1164 0.96
Sequence Information
- Coding Sequence
- ATGGACTCGAAATACACGACAAAGCAGCGGAGAGAGAATCTGCAAATATTGTTTAATAACACAACAGTGATACCTTTTAAGTGGCGCATGCGATATCAGTGTTTCTACTGCCCGCACCAAGAGGCTGAATTCACAGAATTCTTCAAACATACAAAGTCACATGTAAAACTTAAATCCACCGAGCATCCGTACAAACAGTTCATTATAACTAGGGTTATCGTCAAAATCGACGTTTCGAACCTGACCTGCGAACGTTGTGACCACTCATTCAGGTGTTTCGATGATTTAACTACGCATTTAGTCGAAAAACACAGGTTAAAATACGATCCCAGTGTCAACAACCACGTTGAAATGTACAATCTGGACGAATTGCGATGTCCGCAGTGTTCGGACCGATTTAAGTTATTCATAAAACTGCGTTCGCATGTGAAGAATAATCATGCTCCTCTGACGTTGTACTGTGATCAGTGTACGCAAAAGTTTTACAGAAAGCGCGATTTGGCGTTCCATATAAAAAATGCCCATCACGAAGATGGCTATAACTGCTCAGTTTGCTCAGAAAAGTTCATCAATAACAGCAAACTTGGTTTTCACACTAAAGACAAGCATATAACTGTGTGCCACATCTGCTATGAGAGTTTCCAAACTCCGTTAATGAAAAGAGATCATATTAAATCCGCTCATAAAAGCCAGAGCTGTCCACGATGCTTCAGAACTTTTATCTCCAAATTGGGCTTGCAAAAGCACATAAAGAAATGTGCTGTAAAATTAGAGTTTCCCAAAGAGACACAGATTTTGAAAACCTCCACGAAACGAATTAGGGAAAACCTAGCTTGTATACTCAACATGTCCACAGCTTTGCCCTTTAAGTATTACATGAATAGATTCCGCTGTTTCTATTGCCCGAAAGATTTCACCGATTTCGTACCCCTAAAAGAACATACACTTGTAGATCATCCTTACTGTGATGTAGACGAACGAGGACTAAAACTTTGTCGAGGTAAAGACATAAACGTCAAATTAGACATAGCATCTCTCTCTTGCAAACTATGCTTGGAGTCTTTCGAGGAACTTGACACTTTAATAGACCACCTAATTGTGAATCATAAGACCAGCTACGATAAAACCATCACAGGTTTCATGCAGACGTACAAACTAGTCCAGGACCATATGGTTTGCCCCATATGCCAAGTTACGTTCAGATACTTCGGTAAGCTGCTTGCGCACATGAATGAAGTGCACACAGACAACAATATCATTTGCGTTTACTGCGGTCAGACGTTCCGAAGTCAACCCAACTACCGGTCCCACGTATCGCGTTATCACAAACAAGAAAACTTCAAATGTACTTGCGGTGAGACATTCGACAACATAATGAAACTCAAAACGCACAAAAATAAAGCACACAGAGCTAAGACGCATAAGTGCCAGCTGTGTGCCGAGTGTTTTGAGACTATTTACCAGAGGTTACGTCACATGGTGACGGCCCACAACGTGGGACATAAATGCTCTTTTTGCGGCAGAGTCTTCACTAGAAACTCGTTCATGCACGATCACATTAGACGCGCGCACTACAAGGAAAAGAACGTGGAGTGCACGGTTTGTGGTGAAAAGTTCTTTGGCAACGCGCATTTGAAGAATCATATGATCAAACATATAGGGGAGAGGAACTTTCACTGTGACGTGTGCGGAAAGGCTTTCCTTTGGAAGAAAAATCTCAGAGGGCACATGGCGTCACATAACAAACGCGCTTTGATGCGCAGGAATTTGGAAATACTTTTCAACAACACGTCGGTTATACCGTTCAAATGGAGAGGCAAAATACTCTGCTACTACTGTGTGCAAGAGGTTGATGTCAACGACCTGAAAAAGCACACGAAATCCCACGGCTGTTGCTCTAGCAAGGACTTTGCCATTAAATCTGTAAAAGCCGGAGATCGAGAGATAAAACTCGACGTCTCAGACATTGTTTGCGAACTGTGTAACGAGCATTTTCCTAATATTAACGAGGTTATCAGTCACTTGACATTCAAGCACAAGTTAGATTACGATCAGGATGTAGATATACTACTGAGTACTTTTAGGCTCTCTGATTTGACTTGCATCGAATGCGGGGAGGAGTTCAAATCGTTTAAAAACTTGCTCAGTCACGTGAACAAGAATCACCCGCAGAGCACACTGGTTTGCGACCAGTGTTCTAAGTGTTTCACCAAGAAGAGAGATCTGAAGATACACATGAGTAATTACCATAAGGTTGGCGGATATAAGTGCTCCGAGTGTGACGAGGAGTTCCATTCAAACTGGAAGCTAGTCACACACAATGAAGCTAAACATTTCTTACCTTGCAACGTCTGCTTCAAGAAGTTCTCTTCACCAAACAAAAAAACGAAACACATAGAGGCTGAGCATTTAACCTCTTCCATCTTACAATGCGGCTTTTGTTCTCAAACCTACAGCACCAAGAAATCGTTCCTCTCGCATTCCCTAAAGTGTAACGGCCACAAAGAACCGGAGATGGAAACCTCCACTAAAACGCCCGGCGATTGCAAAGTTCGTAAAATCAGAAATAATCTCGCGTGTATCATCAACATGTCCACAGCCTTACCTTTTAAGTACTTCATGAATCGTTTCCGGTGTTTCTACTGCCCAAAGGATTTCGTTGAATCCGATGAAATGAAGGAACATACTATTATGGAACATCCGGTGTGTGATATTAAACATAGGAGCATGAGATTGCGCGGTTTACACAACATATTTATTAAATTAGACATCACATCTTTGACTTGTAAAGTTTGCTTCGACGCTATTCCTGACTTAGACACTCTAGTTAATCACCTAATTACAGAGCATAAAGTGGCCTATGATAAGACTGTAGATAATCGGATACAAACGTTCAAACTGATAAAGGATAGCTACCCGTGCCCGTTCTGCCCCCAAAAGGAACCTTCACGATACTTTGGTCAGGTCCTGAAACACATGAACAAAGTGCATTCTAACAATAACTTAATCTGTGTCTTTTGCGGTACGGCCTTTAGGACCGACTCTCATTTGCGCTCCCACATATCTCGCCACCATAGACCCGAAGGTCACAAGTGTACAGATTGCGATCTGGAGTTTTCTTCCAAACTCCGTCTGAACACGCATCAGGCGAAGGCCCACGGTACGAACATAGTGAAATGTCCCGATTGTCCTGAGAAGTTCCCCAGTACCTACGAGAGACAGAAGCATCTGATAGCGGTGCACAAGTCCGGTGCCACCTGCAAATACTGCGGCCGCATGTTCACTAGGAACTCCTTCATGCACGATCACATCAGGCGCATTCATCTGCGGGAGAAAAAAGTCGAATGCAACATCTGCAACATGCGCTTTTTCGACAACGTCATGTTGAAGATGCATATGGTGAAGCATGTTGGGGATAGGAATTTCCATTGTGACATTTGTGGAAAGAAGTTCCTGTGGAAAAAGAATCTGAGAGGGCACATGGCGTCCCACGACAAGCATGCTAATGCTCAGCATCCGGACATGTTGCATGTATAA
- Protein Sequence
- MDSKYTTKQRRENLQILFNNTTVIPFKWRMRYQCFYCPHQEAEFTEFFKHTKSHVKLKSTEHPYKQFIITRVIVKIDVSNLTCERCDHSFRCFDDLTTHLVEKHRLKYDPSVNNHVEMYNLDELRCPQCSDRFKLFIKLRSHVKNNHAPLTLYCDQCTQKFYRKRDLAFHIKNAHHEDGYNCSVCSEKFINNSKLGFHTKDKHITVCHICYESFQTPLMKRDHIKSAHKSQSCPRCFRTFISKLGLQKHIKKCAVKLEFPKETQILKTSTKRIRENLACILNMSTALPFKYYMNRFRCFYCPKDFTDFVPLKEHTLVDHPYCDVDERGLKLCRGKDINVKLDIASLSCKLCLESFEELDTLIDHLIVNHKTSYDKTITGFMQTYKLVQDHMVCPICQVTFRYFGKLLAHMNEVHTDNNIICVYCGQTFRSQPNYRSHVSRYHKQENFKCTCGETFDNIMKLKTHKNKAHRAKTHKCQLCAECFETIYQRLRHMVTAHNVGHKCSFCGRVFTRNSFMHDHIRRAHYKEKNVECTVCGEKFFGNAHLKNHMIKHIGERNFHCDVCGKAFLWKKNLRGHMASHNKRALMRRNLEILFNNTSVIPFKWRGKILCYYCVQEVDVNDLKKHTKSHGCCSSKDFAIKSVKAGDREIKLDVSDIVCELCNEHFPNINEVISHLTFKHKLDYDQDVDILLSTFRLSDLTCIECGEEFKSFKNLLSHVNKNHPQSTLVCDQCSKCFTKKRDLKIHMSNYHKVGGYKCSECDEEFHSNWKLVTHNEAKHFLPCNVCFKKFSSPNKKTKHIEAEHLTSSILQCGFCSQTYSTKKSFLSHSLKCNGHKEPEMETSTKTPGDCKVRKIRNNLACIINMSTALPFKYFMNRFRCFYCPKDFVESDEMKEHTIMEHPVCDIKHRSMRLRGLHNIFIKLDITSLTCKVCFDAIPDLDTLVNHLITEHKVAYDKTVDNRIQTFKLIKDSYPCPFCPQKEPSRYFGQVLKHMNKVHSNNNLICVFCGTAFRTDSHLRSHISRHHRPEGHKCTDCDLEFSSKLRLNTHQAKAHGTNIVKCPDCPEKFPSTYERQKHLIAVHKSGATCKYCGRMFTRNSFMHDHIRRIHLREKKVECNICNMRFFDNVMLKMHMVKHVGDRNFHCDICGKKFLWKKNLRGHMASHDKHANAQHPDMLHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -