Yror001477.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- -
- Assembly
- GCA_947308005.1
- Location
- OX371023.1:6694845-6697151[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.4e-05 0.00099 20.0 2.8 1 23 9 32 9 32 0.94 2 19 0.00026 0.019 16.0 0.1 3 23 39 60 38 60 0.97 3 19 2.1e-05 0.0015 19.4 0.2 2 23 69 91 69 91 0.97 4 19 6.9e-05 0.005 17.8 3.0 3 23 99 120 97 120 0.93 5 19 0.00048 0.035 15.1 0.1 2 23 128 150 127 150 0.94 6 19 2.5e-06 0.00018 22.3 3.3 2 23 158 180 157 180 0.96 7 19 6.6e-06 0.00048 21.0 1.1 1 23 186 209 186 209 0.97 8 19 5.6e-06 0.00041 21.2 1.7 1 23 231 254 231 254 0.98 9 19 6.6e-05 0.0048 17.8 0.2 3 23 291 312 289 312 0.97 10 19 1.2 85 4.4 0.9 2 21 320 339 319 340 0.92 11 19 0.1 7.3 7.8 2.4 1 23 348 371 348 371 0.95 12 19 0.002 0.15 13.2 5.9 1 23 397 420 397 420 0.97 13 19 4.4e-05 0.0032 18.4 0.7 2 23 427 449 426 449 0.96 14 19 0.00011 0.0082 17.1 2.2 2 23 456 478 455 478 0.94 15 19 0.00029 0.021 15.8 2.2 1 23 484 507 484 507 0.98 16 19 0.26 19 6.5 5.0 2 23 515 537 515 537 0.95 17 19 0.005 0.37 11.9 1.7 1 23 544 567 544 567 0.97 18 19 0.016 1.2 10.3 3.8 1 23 574 596 574 597 0.95 19 19 0.018 1.3 10.2 2.7 3 23 612 633 611 633 0.91
Sequence Information
- Coding Sequence
- ATGGCACAGTCCGGCCTTGACAACTTTGTCTGCGACTACTGCAGCCGTGGTTTCACTAGGAAATACAACCTTCGGATTCACATCGACAACTGTCACCTGAAGACTGACACATTATGTAGCATCTGTGACCAGACGTTTGGCAGTCCGAGTGGCCTGCAACTTCACCTGAGCCGCGGCCATAACAGCAACGGCGAAGGGTTCCCAGAATGCGATATTTGTGGGCGGATATTCAAACGAAAGCAGAATATCGTCTCGCACATGATAACAATCCACCTGCTAGGCAGCGACATCAACTGCCTGCAGTGCGAGAAGAAATTCACAACGCAACGTAACTTGAAGCGTCACATTCACCAAATACACAACCCGCAGTTCTCTTATTTGGAATGTGACAATTGCAGCAAGATTTTCAAGGGGAAACAGTCCCTGATTGCTCATATACAAGCTACTCATAACGTCTCGAAATACTCATCTCAGTGCCATATCTGTCAAAAAGTCTACACGAACAAGAGGAATCTAAAAAGGCACATAGAAAGTTTCCACGGGGAACGAGGAGAGTTTAAATGTCCACTTTGCCCCAAGATTTATACGTCGAATCAGAGTTTAAGACGACACTCTAGGGTACGCCACAGACCTGGTCACCAGCATCGTTCGCGAGTGTACTTTCAGAAAAACTTAACGTTAACTTACAAGTTCACTTGCACCAAATGCAAAAAATCGTTTAGCCAGGAGCCTTTATTGAGGCAGCACGTTAAAACTGAGCATTCGTTCAAAACCTTTTACAAATACTGCAGAGATAGTCTCACGAATCGAGAGGAGATGAAGTCAAACTACTCTGTAGGTCACACACAGAAAGGCGCAGAGTCTTACGGATGTGAGTTTTGCGACACTGCATTCACAAGCGTGTATGAGTTGAAGGATCACATGAGGATTAATCACGACGTAGACTACTGCCTTTCCACGTGTAATGTATGCTTCAACAAATTCTACAGCAAGGAGTCCATATCTAACCACAAAAAGGTATGCTTGCCACCACATGGCGCGCACTCCTGCAACTACTGCGAGAAGCTCTTTACAGAGGTTTCCAGCTTAGAATTCCACACGCGCATCTTTCATCCACAGTCCCAAATAGCTGATTCTGACATTACTTCGACGAATCAGGATGATAACGTTGAAGACGCCAACACTATCTTCAAATGCGTGCATTGCGATAGAGTATACTACAGCGACCGGTCCCTAAAACACCACATGAAGCTCAAACATACTACAGACGAGGCCGTTGAATGCAATCAGTGCGGCAAAATATGTAACAACAAGTATTACTTAGCCAGTCACATAAAGATAGTCCACTCAGACGACTCGTGGTCGAAATGCGACTACTGCGAGAAACAGTTCAAATCCAAGAGGAATATCCGTCGTCACATAGAGTACACGCACTTGGGTATGCAAAGGTACAAATGCGTGGAATGTGAGACGTTGTTCAAAGAGAAAAGGAGTCTCCGAAAACACGTGCGGACAAAACACGCCGAGTCAACGGCATTTCCACAGTGCCATCTGTGCCAGAAGAGATTCGAATCGGCAAAGTCGTGTAAAATCCACCTGAAACTTGTACACTCGTTCAACATGAACACCCATCCATGTCACATGTGCTCAGTATCATTCAACGCGTTCGACGCGCTCAAAATACACCTACAGACCAGCCACCTGGCGGAGGACGAGATTTACAAGTGCGAAGAGTGCAACTTAGTCTTCAAGGGGCACGAGAAATTCGAACAGCACAACGAGTCTCACCACGTGAACTTAGTCCCCGATATCAAGCAAAAGGTCCTGCCGCGCTGTATCATATGCATGAAGGATTTCAGCACAAGAAAGACGCTCAAAAGACACATTAAGAAGTTCCACTTGGAGTTTGACCCTGACGAGCTGGCGAATTTCGGCTCGAGGAAGCGGATCTTCAACGTCGATTGTGAGAACTGCCTCAAGAAATTCAACGAGGACCATCACAACGTCTACGCAAAACTCAAGCATCAGAAAACGGCTATCGTTTTCACGTGCGAAGTATGCCGTAGCTCCTACAACGCTTTAGAGTTCTTTGTCCAGCGTTACAGGCAGCGGAACTTCGAATGTAAGACTAAGATGATACTGAGTGAGTTGTGCACGGCCGAGATGAGTGACGGGGAAGGTGATGTCTCGAGTTTTGGGTTGTTCGCCGAAGAAATGAGAATGGAACCGGAGAGCACCACAAGCGATGCCGTCAAGACTGAACCGCCGGATGAGGTTGTGGTCAAAAATGAGCCGTTGTCGCCTTGA
- Protein Sequence
- MAQSGLDNFVCDYCSRGFTRKYNLRIHIDNCHLKTDTLCSICDQTFGSPSGLQLHLSRGHNSNGEGFPECDICGRIFKRKQNIVSHMITIHLLGSDINCLQCEKKFTTQRNLKRHIHQIHNPQFSYLECDNCSKIFKGKQSLIAHIQATHNVSKYSSQCHICQKVYTNKRNLKRHIESFHGERGEFKCPLCPKIYTSNQSLRRHSRVRHRPGHQHRSRVYFQKNLTLTYKFTCTKCKKSFSQEPLLRQHVKTEHSFKTFYKYCRDSLTNREEMKSNYSVGHTQKGAESYGCEFCDTAFTSVYELKDHMRINHDVDYCLSTCNVCFNKFYSKESISNHKKVCLPPHGAHSCNYCEKLFTEVSSLEFHTRIFHPQSQIADSDITSTNQDDNVEDANTIFKCVHCDRVYYSDRSLKHHMKLKHTTDEAVECNQCGKICNNKYYLASHIKIVHSDDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHVRTKHAESTAFPQCHLCQKRFESAKSCKIHLKLVHSFNMNTHPCHMCSVSFNAFDALKIHLQTSHLAEDEIYKCEECNLVFKGHEKFEQHNESHHVNLVPDIKQKVLPRCIICMKDFSTRKTLKRHIKKFHLEFDPDELANFGSRKRIFNVDCENCLKKFNEDHHNVYAKLKHQKTAIVFTCEVCRSSYNALEFFVQRYRQRNFECKTKMILSELCTAEMSDGEGDVSSFGLFAEEMRMEPESTTSDAVKTEPPDEVVVKNEPLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545067;
- 90% Identity
- iTF_01545936;
- 80% Identity
- -