Yplu017158.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371213.1:8387210-8402390[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.064 5.9 8.4 0.6 1 23 268 290 268 290 0.97 2 12 0.13 12 7.4 3.3 1 23 298 321 298 321 0.93 3 12 0.00014 0.013 16.7 2.0 1 23 426 448 426 448 0.99 4 12 0.084 7.8 8.0 0.8 2 23 457 479 456 479 0.95 5 12 0.053 4.9 8.6 2.6 1 23 483 505 483 505 0.98 6 12 0.0012 0.12 13.8 2.7 1 23 510 533 510 533 0.98 7 12 0.1 9.4 7.7 5.1 3 23 539 560 538 560 0.97 8 12 8.3 7.7e+02 1.7 0.0 2 20 580 598 579 600 0.91 9 12 5.9 5.4e+02 2.2 0.9 1 23 659 682 659 682 0.92 10 12 3.2e-06 0.0003 21.9 1.3 1 23 691 713 691 713 0.98 11 12 0.00093 0.086 14.2 1.4 1 23 719 741 719 741 0.97 12 12 3.8e-06 0.00036 21.7 2.9 1 23 747 770 747 770 0.98
Sequence Information
- Coding Sequence
- ATGTGGCACTTAAAGGTGTGCACTGTATGCCTTAATACAGAAAGCAATTTGTTTGATTTAGACCATAACAATTTACGTTCGGACTACAATTTGGTATCAGGCCTAAAGACACGAAAAGGCAATGGATTGCCTGGTTATTTGTGCGTTGAGTGCTCTGCTTATGTTAGACGGTTCAAGAGCTTCAGAGACAAATGCCAAAGATCAAATTTTACACTTCAAGAGATTTTGTTGCAGGATAACGAAATAACACCACAGCATATACAAGCCATTAACAGAGAAGTCATTGACATAATGCCAACACTGGCATTCTCAGACTATAGAAGATGTAAATATGAGACCACAAAGTTTAAATGGGTGAAGAATAATCGCCCCAGTGTAGCAAGTCTTGAGAATGTAACCATCATGCAGTGCAACACTATAGAGGACATGATGTTCGAAGCTCCACCTAGAAAAAAGTGTAAACTAATAGAGAAAATTCAATATGAAGGAGACACTGATAGTCTCAAAGAAGAGTTGGACACCACAACAGAGAAGAATGATTTAGCCAATATGCAAATTGAAGAGCAAACAAACATGAACAGCCTGAATGACAATTATTTCGATGATTTCATTGAAAAAGAACAATATAGTGACAATGGGGAAACAGACCTGAATCCTACAGATTCCAACCTGTTGATAGACAAAGAAGACAAAACAGCAGACGGCTCTACTTTAGATCAAGAGTATGCTACTGTTGTGCCAATATCATTTTCTGAAGCCAAGGCAGCACTGGAAGTGTACAATATGTTTACAGGAGGCAAATTCAAGTGTAAGGTCTGCAACAGGGGATATCTCAAGGAAGCCAGATTAGAAGCTCACACCAAAATGCATGATAAGCATCTGAATGGTCCTTTCCGATGCCAGCTGTGCAACTTCTACTACAAGACTGACTTCATGTTAAGAACTCATATGACTGACAAACACATGTACAAGTACATCTGCCAGAAGTGCCCCGAAGTCAACTTTGATCGTACCTCAGCGAAGCAGCACTTCATCTGGGCGCACCTGCAACAGGGGGCCAAGCGCAACGCCAACTGGTATGAGAGCAAGCCGGCGTGGGTGCGCGCGCGCAGTCGGAGCGACGTGGCCGCGCACAGTAAGATCGGCAAACTGCGCCCGGTCAGGAAGAACGAGATGCTTCCTAAGGACTTTATAAAGATAACGGCAGTGAAGCAGGCGGACCAGTACCAGCTGGTGTTGGACCGACGCAACAGTCGCAACTACATATCGTCGGTGTACAAATGCGACTTGTGCTACCGTGGCTTCCGCGAGGCCGAGACCTACAATAAGCACATGAAAAAGCATGATGAGAAACTATGCGGGCCACTGCAATGCGACATGTGCAAGCTGTACTTCCCGACCACCCGGTTCATGTACAAACACATGATTGTGACGCACCGTGACCGCTACTCGTGCCAGAAGTGCGACTTCGTCTGCTTTAACAGAGGGCAGGCGATCCAGCACTACAGGTGGCACAAAAACGTCGTTTACAAATGTGGACAATGCGACCTGGTGTTCACAAAACACTCGACCCGCCTTACCCACATACGGATCAAGCATCCGTCGACGGAACTGTGTAATATCTGCGGACACAGTTTTGTGAGCAGCCACGGACTTCACTTTCACCAGAAGAAGGTGCACTCTCGAGAGGAGATAGCCGCGTCGAAGGCGGTCAGCGTCGACAAACAGGCAAACCTTTACTGCGCCGAGTGCCAGGTCCAGTTTATGAGTGACAGTGCCTACGTCACTCACCTCGGCAGCTCCAGCAAGCATTGCTCTGTCAACTTGTCGATCCAAGACAACGAGTCGAAGCGGTTGCGGCGAGTGCGCGGGTACCAGGGCAACGTCCGCAAACCGCGAGAGCCGCGGGAACCCCGTACGCCGCGGAAACGGACCAGCAACGAGCTAATTGTCAACAACGGACAGCCCACAGCACACGACTGCGAGTTGTGTGGCGTCCACCTCCCCAACGACGTAAAGGCGCGTCAACACTACCAGACTGAGCATCCCGGACAGGAGTTTCTAAAGCGATACATGTGCGATGTGTGTGGGCACACCACTAAGCAATACGCCAACCTAATGGTCCATATGCGGACGCACACGCGCGAGAAGCCGTACGCGTGCTCGTTCTGTGACCGCCACTTCAGCATGCCCAGCAACCGCGACCGCCATATGGTGGTTCACACTGGCGAGAAACGCTACGAGTGCCCGCACTGTCACCGCCGCTTCACCCAGAGCAGCGCTGTCAAACTGCACATTCAGACCGTCCACCTAAAGATACCTTACGCGCCTTGGGATAAGAAGAACAGGAAGCGAAGACGAGAAAGGGAAGCGGCCCTACCTCATTCGGAGCCCAAACTGATGGTGGACGCGACCGGCGAGTATATCAACGCGTACATTACTTATGAGCAGACGTAG
- Protein Sequence
- MWHLKVCTVCLNTESNLFDLDHNNLRSDYNLVSGLKTRKGNGLPGYLCVECSAYVRRFKSFRDKCQRSNFTLQEILLQDNEITPQHIQAINREVIDIMPTLAFSDYRRCKYETTKFKWVKNNRPSVASLENVTIMQCNTIEDMMFEAPPRKKCKLIEKIQYEGDTDSLKEELDTTTEKNDLANMQIEEQTNMNSLNDNYFDDFIEKEQYSDNGETDLNPTDSNLLIDKEDKTADGSTLDQEYATVVPISFSEAKAALEVYNMFTGGKFKCKVCNRGYLKEARLEAHTKMHDKHLNGPFRCQLCNFYYKTDFMLRTHMTDKHMYKYICQKCPEVNFDRTSAKQHFIWAHLQQGAKRNANWYESKPAWVRARSRSDVAAHSKIGKLRPVRKNEMLPKDFIKITAVKQADQYQLVLDRRNSRNYISSVYKCDLCYRGFREAETYNKHMKKHDEKLCGPLQCDMCKLYFPTTRFMYKHMIVTHRDRYSCQKCDFVCFNRGQAIQHYRWHKNVVYKCGQCDLVFTKHSTRLTHIRIKHPSTELCNICGHSFVSSHGLHFHQKKVHSREEIAASKAVSVDKQANLYCAECQVQFMSDSAYVTHLGSSSKHCSVNLSIQDNESKRLRRVRGYQGNVRKPREPREPRTPRKRTSNELIVNNGQPTAHDCELCGVHLPNDVKARQHYQTEHPGQEFLKRYMCDVCGHTTKQYANLMVHMRTHTREKPYACSFCDRHFSMPSNRDRHMVVHTGEKRYECPHCHRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRREREAALPHSEPKLMVDATGEYINAYITYEQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01547075; iTF_01545316; iTF_01543398; iTF_01544425;
- 90% Identity
- iTF_01545316; iTF_01547075; iTF_01543398; iTF_01544425;
- 80% Identity
- -