Basic Information

Insect: Yponomeuta plumbellus
Gene Symbol: -
Assembly: GCA_947310845.1
Location: OX371217.1:3712518-3718694[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.4e-05 0.0032 18.7 1.8 1 23 307 329 307 329 0.98

2 9 0.0044 0.41 12.0 3.1 1 23 402 424 402 424 0.98

3 9 0.00029 0.027 15.8 1.8 1 23 475 498 475 498 0.96

4 9 0.00029 0.027 15.7 0.2 2 23 521 543 520 543 0.92

5 9 2.8e-05 0.0026 19.0 1.0 2 23 553 575 552 575 0.96

6 9 0.019 1.7 10.1 4.4 3 23 586 606 585 606 0.98

7 9 0.0029 0.27 12.6 0.5 1 23 612 634 612 634 0.97

8 9 0.24 22 6.6 2.9 1 22 640 661 640 664 0.90

9 9 0.00029 0.027 15.8 1.5 1 23 699 721 699 721 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.4e-05	0.0032	18.7	1.8	1	23	307	329	307	329	0.98
2	9	0.0044	0.41	12.0	3.1	1	23	402	424	402	424	0.98
3	9	0.00029	0.027	15.8	1.8	1	23	475	498	475	498	0.96
4	9	0.00029	0.027	15.7	0.2	2	23	521	543	520	543	0.92
5	9	2.8e-05	0.0026	19.0	1.0	2	23	553	575	552	575	0.96
6	9	0.019	1.7	10.1	4.4	3	23	586	606	585	606	0.98
7	9	0.0029	0.27	12.6	0.5	1	23	612	634	612	634	0.97
8	9	0.24	22	6.6	2.9	1	22	640	661	640	664	0.90
9	9	0.00029	0.027	15.8	1.5	1	23	699	721	699	721	0.98

Sequence Information

Coding Sequence: ATGGACCTTCAAATCAAACAGGAAACACAGCCAGTGCCGGTCGAGACACCACAGTTATATCAACACCAAGAAACACCTGCAAACCAGGATGCACTTATGCATATAGTTCCTGACGAACCATTGTGCGAACCGGATAATGTTCTGGCCAGGTTAATTGATAATATCCATCAGGATATAAAACATGAATTGGACATTACAGAGCATGATTTTTACCAAGACAGTATTCTGCCAACTAGAACTAACCCAGAGGAGATTCTTGGTGTAAACAATCCATCTGAACATGCTTCTACAGAATCAGTCACCGCAGACTTAGGATCGGTAAATTCTGAGCAAATCGTCGGAGAAATGCCGGTGCCACAAGTGGATATAGGGGTCAAGGAAGAAAATCAGGAGTCAATATGTACGGACGGTCTGGTTGCCGTCAAAGATGAGCCCGGTGAAGGTTATGGCAGCTTCTACCAGTACTCGCAGTATGACAGCGCTGTGGACGAGTACGATGGGAGTGCCATGGGCCATGTAGAGGCCTGCCTGAGTGAGGAGGCTGACGTCAAGATGGAGAATAGTGAGACATGTGGTAACCCAGAGTCCCAAGCATCCTTCAACAGTCTGAGCATGAAGCTAGACCCAGACATTAGCGTCACCGAAACGCATCTCATCTCTAACAAACTCTACAACACCACCTCAACTGTCACCCGTCCCCACGACGGTCTCATAGAATCTCAAACCACCAGAACCTTGATCATGGAGATCAGACCATGTTCTAGTGGAGACTTGCTGAAAGTAGGGAAACAACCCGACGAGATTCTCTCAACGACCGAAGCCATGCTCAAAATCCCCGACGATGCATTCCAACTCAACTCCATAACAGGAAACCTTCTGCCGCTCGGAGAGGTCTACTCGGACCCCCCCAAGGAAATATTCCCTTGTGCGGAATGCACCAAAATCTGCAAAAACACTGGTTCTCTAAAACGTCACATGAAAGTTCACGAGTCAATAGTACGGTACCAAACCGGAAGGGCTAGAGGGCGCATTAAATCTTCTGAAAGGTTTAGGGAGAAACGCATGATAAAAAAGGCGGAGCTCGAGAAACACCGCTGCGAATGCGGCGTGTCCCCCTGTCTCAGCAAACTGGAGCCAAAAGACAACTCTTGCCCACAGGATTGCACACGATGCCCGAAGCGGAAAAAGAAGAAAAGGAAACGGTTTCCATGTAAATTCTGCCCGACCGACTACGATACACACAAAGATCTGTTCCGGCATCTTAGCAAGCACAAGAAAGTGCAACTGCTCGAGTACAAAGCTGTCTCAGAAGTGGTGGAAGGGGAAGAGACGCTAAGTTGCTTCCTTTGCGGCGTGAAGTTCCAGAATAAAATCACTGGACTGTCAGAGTTGAAGGCTCACATCATGGACCACGAGGGTCCTCACGAGTGCCAGCAGTGCAAGGAGACTTTCAAGACCTCAGCTAGCTATGCGACGCACATCTCAAAGGCGCATCCAGACGCCAAGGGGCAGTCCGTGATAGAACTGCTGATAGCGGTCGCCAAACTGGCACAGTCTTGGAAGTGTGAGGACTGCAAGATTAACTTCAAAAACGCTGATGACCTAGCAAAACATAATGTCACTGAACATAGGCAAACGAAGCTAGACCCTAACAAACAATGCCTGGACTGTCGCAGAGTCTTTTCAACGTCATCCGGTCTTACATCGCACAGGCGGCTCGTTCACAAGGACACGACTTTCGAGCCAGTGGTGCTTTGTGTTCATTGCAGGAAAAACTGCAAGGACGAGAAGGGCTTAGAGAGCCACATGCGGCTGCATTCTGAAGACCGCAAGTTCCCGTGCCGGTTTTGCGATTTCCGATTCGCGACTCCCGAAAAGCGGAAGGTTCATATGGAGATACACACGGGCAATCTGCGATTTGTGTGCTTCATTTGCGAGTACAGATGCAGCTCCGAGAATAGACTGAAGAATCACAAATTGTCCGCGAAACACTTGAGCATGAAGGAGTATCTGTTGAGTCCTTCCACTGCGAACGAACTCGTCAAAGAAGAAATTAAAAGCGAAGAGAAATCTAAGGTGAAAGTGAAAAGTGAGCACGAGTGTGATATTTGTGGTGAAAAGTTCTCGAGTGAGAAAAAAATGCTGGTGCACAAACAGACTCATCCGTTCATCTCTTTCCCGAATGAAGATCAGCCCACTAGGATATTCTTCAAATGA
Protein Sequence: MDLQIKQETQPVPVETPQLYQHQETPANQDALMHIVPDEPLCEPDNVLARLIDNIHQDIKHELDITEHDFYQDSILPTRTNPEEILGVNNPSEHASTESVTADLGSVNSEQIVGEMPVPQVDIGVKEENQESICTDGLVAVKDEPGEGYGSFYQYSQYDSAVDEYDGSAMGHVEACLSEEADVKMENSETCGNPESQASFNSLSMKLDPDISVTETHLISNKLYNTTSTVTRPHDGLIESQTTRTLIMEIRPCSSGDLLKVGKQPDEILSTTEAMLKIPDDAFQLNSITGNLLPLGEVYSDPPKEIFPCAECTKICKNTGSLKRHMKVHESIVRYQTGRARGRIKSSERFREKRMIKKAELEKHRCECGVSPCLSKLEPKDNSCPQDCTRCPKRKKKKRKRFPCKFCPTDYDTHKDLFRHLSKHKKVQLLEYKAVSEVVEGEETLSCFLCGVKFQNKITGLSELKAHIMDHEGPHECQQCKETFKTSASYATHISKAHPDAKGQSVIELLIAVAKLAQSWKCEDCKINFKNADDLAKHNVTEHRQTKLDPNKQCLDCRRVFSTSSGLTSHRRLVHKDTTFEPVVLCVHCRKNCKDEKGLESHMRLHSEDRKFPCRFCDFRFATPEKRKVHMEIHTGNLRFVCFICEYRCSSENRLKNHKLSAKHLSMKEYLLSPSTANELVKEEIKSEEKSKVKVKSEHECDICGEKFSSEKKMLVHKQTHPFISFPNEDQPTRIFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01544346;
90% Identity: iTF_01544346;
80% Identity: -