Yplu017159.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Yponomeuta plumbellus
Gene Symbol
-
Assembly
GCA_947310845.1
Location
OX371213.1:8402788-8419513[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.054 5 8.6 2.6 1 23 295 317 295 317 0.98
2 11 0.47 44 5.7 4.5 1 23 325 348 325 348 0.95
3 11 0.25 23 6.5 3.4 1 23 352 375 352 375 0.97
4 11 0.00042 0.039 15.3 2.1 1 23 478 500 478 500 0.99
5 11 0.0099 0.92 10.9 2.6 1 23 508 531 508 531 0.98
6 11 0.00016 0.015 16.5 2.5 1 23 563 586 563 586 0.98
7 11 0.0073 0.67 11.4 1.3 3 23 592 613 591 613 0.97
8 11 1.6 1.5e+02 3.9 0.1 2 20 633 651 632 653 0.92
9 11 2.4e-06 0.00023 22.3 1.0 1 23 734 756 734 756 0.98
10 11 0.00026 0.024 15.9 0.5 1 23 762 784 762 784 0.96
11 11 1.8e-05 0.0017 19.5 3.2 1 23 790 813 790 813 0.98

Sequence Information

Coding Sequence
ATGTGGGATCTGAAGGCGTGCACTGTGTGCCTTAGCACAGAGATTAATTTGCATAATATGGACGGCAGCATCCTTCGAATAGACTTCAACTTGGTGTCTGGTTTGGATACCCATAGTAGAGACGGTTTGCCCAGTTATTTGTGCGTGGAATGCAAGGCTTACGTTTTAAGATGCAAGACTTTCCGCGAAAAATGCCAGAGGGCGAACTCGGTCTTACAAAGGATTTTGGGCCAAGAAGACGAGTTAACACTGGACCTTATCAAAGAAGTGAACAGAGAATCACTAGACCTACTCCCAACAATATCCTTCTCAGATGACAGAAGAGCAAAGTATGAAACAGTTCGGTATCAGAAGAAAGGCTCCAGTAACCGCGATGGTGACCATAAGAGTGAACGGCATAGTGAACGCCACAGCGAGCGACATAGCGAGCGCCGCAGTGAAAGAAAAAGTGAAAGACACAGTAAACGTCACAGCGATCGCAAAAATGATGTCATGGTTGAAGTTCCACCCAAGAAGAAACTCAAATTATGTGAAAAAAACATAAAAGTGGAAGTTGATGATGATATCTTAAAACAAGAAACTCTTGATCTGCCCCCTGAAGAATTTGAGGCTGATCAAAGCTTCTTCGGCAACAGTTACTTTGAGGACTTACCAACTCACGATGATGATGATCATAGTGACTTCGGCAATGATGCAAATGATGGTATTGAGGAAAATGATGGCAATGACTCTGAAGATGCTAATCTGAAATCTATGCAGTTCAGTGATGATAAAACTGTGGAAGGTATCCCATTAGATGAAGAGTATGGTAACATGGTGCCAATATCACTGAAGGAAGCCAAGGCAGCTGTGGATATATTGAACAAATACTCACCTGGCAAGTACAGGTGCAAAGTTTGCAAACGTGGGCACAGCAATAAAGAGCGATTGGAGGCGCACTCTAGAATGCATGAGAAGCATTTGAACGGTCTGTTCCATTGCAAGCTGTGCCTATTCTACTACCGCACGGAGTTCTTGCTGAAGACCCACATGATGGAAAAACACATGTACAAATATGTGTGCAGCAAATGTCCCGAGGTGTGCTTTGAGCGCACAACAGCCCGCAAGCACCACAACACGGCTCACGGTACCGTCCGACGGACCTCGGCCAAGCGCGAAGCCGACGAAAGCGACACCGAGGCCGAGCCGATGCTTCTACAAATCCTCATGGGCGACAAGAAGGCCGTCGCCGTCGCCACGCACAAGGCCAAGGCGGTGAAGGCTAAGAAGAAGGGCAAGAAGCTGGGGAAAAAGAAGAAGGCGCCGCCGCCTAAGAAGAAGAAGAGGCCAATCATGGCGCGGAATCTCATCAAGAAAGTGGCGATCAGCCCGCTGGACCAGTATCGGCTTGTGGCGGACAGGCAGAACAGCCGCAACTACATCGCGGCCCGGTACAAGTGCGATTTCTGCTACCGCGGCTTTCGCGAGGCCGTCTCCTACCAGAATCACATGAAGAAGCATGATGCGGCGGCGACGGGTCCCTTCCAATGCGACATCTGCAAGCTCCACTTCCCGACCACGCGCTCCGTGTATGGCCATATGCGCAAGACCCATCTCTGGCGCTACGTCTGCGTCAAGTGTCCCCAGTTCATCTGCTATGCTAGAGGTCAAGCAATCAACCACTACAAGGGTCACAAGAATGTCACGTATAAGTGTGACAAATGCGATCTCGAATTCAAGAAACAATCGACGCGTCTGACCCACATGCGTATAAAGCATCCGTCGACCGACCTGTGCAACATCTGCGGACACAGCTTCGTTAGCAGCAACGGTCTGAGCTTCCATCAGCGCAAGGCGCACAGCCGCGAGGAGATCGCGGCGGGCCACGCACAACGCGTCGACAAGACTTCCCCTCTGTACTGCGCCGAGTGCAACATCCACTTCATGTCTGACGCCGCCTTCCAAGTTCATCTCGGCAGCTCCTCCAAGCATGCTACCGTCAACATATCGAGCCAAGAGGACGAGATCCGCCGCCGCCGCCGGCAGCGCGGCAAGGTCCCCATCACGCCGCGCCGCAAGCGCGCCGAGCCCGCCGGCGTTGTCAACTGCGGCGTCGCCACCGGCTCCGACTGCGAGATGTGCGGCGTGCATCTTCCCAACGACGTAAAGGCGCGTCTACACTACACCACCGAGCACCCCGGCGCCGAGTACCTCAAACGGTACATGTGCGACGTCTGCGGACACACCACCAGGCAATACGCCAACTTGGAGGTCCACATGCGTACTCACAGCCGCGAGAAGCCCTACGCGTGCACTTACTGCGACCGCCGTTTCACCATGCCCAGCAACCGGGACCGCCATCTTGTCGTGCACACCGGAGAGAAGAAGTTCGAGTGCGAAATCTGCCATCGCCGCTTCACACAGAGCGCTTCGGTCAAGCACCACATCCAGACCGTCCACCTCAAGATCCCCTACCCGCCCTGGGACAAGAAGAACCGCAAACGGAAGAAGGAACTCGAAGCCGCCGCCGCGGCATCCAGTATGCCGCATCCGGAGCCCCGGATGATGCTCGACGCCACTCAGGATTACATCAAGTCCTATATCAACTACGAGCAAACTTACAATCGCCTGTAA
Protein Sequence
MWDLKACTVCLSTEINLHNMDGSILRIDFNLVSGLDTHSRDGLPSYLCVECKAYVLRCKTFREKCQRANSVLQRILGQEDELTLDLIKEVNRESLDLLPTISFSDDRRAKYETVRYQKKGSSNRDGDHKSERHSERHSERHSERRSERKSERHSKRHSDRKNDVMVEVPPKKKLKLCEKNIKVEVDDDILKQETLDLPPEEFEADQSFFGNSYFEDLPTHDDDDHSDFGNDANDGIEENDGNDSEDANLKSMQFSDDKTVEGIPLDEEYGNMVPISLKEAKAAVDILNKYSPGKYRCKVCKRGHSNKERLEAHSRMHEKHLNGLFHCKLCLFYYRTEFLLKTHMMEKHMYKYVCSKCPEVCFERTTARKHHNTAHGTVRRTSAKREADESDTEAEPMLLQILMGDKKAVAVATHKAKAVKAKKKGKKLGKKKKAPPPKKKKRPIMARNLIKKVAISPLDQYRLVADRQNSRNYIAARYKCDFCYRGFREAVSYQNHMKKHDAAATGPFQCDICKLHFPTTRSVYGHMRKTHLWRYVCVKCPQFICYARGQAINHYKGHKNVTYKCDKCDLEFKKQSTRLTHMRIKHPSTDLCNICGHSFVSSNGLSFHQRKAHSREEIAAGHAQRVDKTSPLYCAECNIHFMSDAAFQVHLGSSSKHATVNISSQEDEIRRRRRQRGKVPITPRRKRAEPAGVVNCGVATGSDCEMCGVHLPNDVKARLHYTTEHPGAEYLKRYMCDVCGHTTRQYANLEVHMRTHSREKPYACTYCDRRFTMPSNRDRHLVVHTGEKKFECEICHRRFTQSASVKHHIQTVHLKIPYPPWDKKNRKRKKELEAAAAASSMPHPEPRMMLDATQDYIKSYINYEQTYNRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01545234;
90% Identity
iTF_01547000;
80% Identity
-