Basic Information

Insect: Yponomeuta plumbellus
Gene Symbol: -
Assembly: GCA_947310845.1
Location: OX371219.1:8759041-8762417[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.037 3.4 9.1 1.0 1 22 115 136 115 138 0.89

2 15 1.1 1e+02 4.5 0.5 2 23 164 186 163 186 0.92

3 15 1.1 1e+02 4.5 2.6 1 23 206 228 206 228 0.94

4 15 4.8e-05 0.0044 18.2 1.0 1 23 232 254 232 254 0.99

5 15 0.14 13 7.3 0.9 1 12 261 272 261 274 0.91

6 15 0.58 54 5.4 4.6 1 19 290 308 290 313 0.89

7 15 0.0002 0.019 16.3 0.6 1 19 321 339 321 340 0.96

8 15 6.7 6.2e+02 2.0 0.1 9 23 340 355 339 355 0.88

9 15 1 93 4.6 5.5 1 23 423 445 423 445 0.97

10 15 0.012 1.1 10.7 1.7 1 23 449 471 449 471 0.97

11 15 5.8 5.3e+02 2.2 2.8 1 12 478 489 478 501 0.77

12 15 2.9e-05 0.0027 18.9 2.4 1 23 539 562 539 562 0.98

13 15 2.6e-05 0.0025 19.0 0.6 1 23 568 590 568 590 0.98

14 15 1.2e-07 1.1e-05 26.4 1.0 1 23 597 619 597 619 0.98

15 15 0.0016 0.15 13.4 3.9 1 23 624 647 624 647 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.037	3.4	9.1	1.0	1	22	115	136	115	138	0.89
2	15	1.1	1e+02	4.5	0.5	2	23	164	186	163	186	0.92
3	15	1.1	1e+02	4.5	2.6	1	23	206	228	206	228	0.94
4	15	4.8e-05	0.0044	18.2	1.0	1	23	232	254	232	254	0.99
5	15	0.14	13	7.3	0.9	1	12	261	272	261	274	0.91
6	15	0.58	54	5.4	4.6	1	19	290	308	290	313	0.89
7	15	0.0002	0.019	16.3	0.6	1	19	321	339	321	340	0.96
8	15	6.7	6.2e+02	2.0	0.1	9	23	340	355	339	355	0.88
9	15	1	93	4.6	5.5	1	23	423	445	423	445	0.97
10	15	0.012	1.1	10.7	1.7	1	23	449	471	449	471	0.97
11	15	5.8	5.3e+02	2.2	2.8	1	12	478	489	478	501	0.77
12	15	2.9e-05	0.0027	18.9	2.4	1	23	539	562	539	562	0.98
13	15	2.6e-05	0.0025	19.0	0.6	1	23	568	590	568	590	0.98
14	15	1.2e-07	1.1e-05	26.4	1.0	1	23	597	619	597	619	0.98
15	15	0.0016	0.15	13.4	3.9	1	23	624	647	624	647	0.95

Sequence Information

Coding Sequence: ATGAGTTTCTGTGCAAGAATAAGTACACCCAACATTTGGCGATCACCGAGCCTTTGCATATCAGCTAAGAAAGTGGTGAGACCTGTAAAGGGGGTGTCTGTTTTAAAAATACCCTTGAATCCGGCAAAGCCTAATGTAAGAAAGATAACACGGCTGGTACGTAAAAAACCACTCACTGCCCCCAAAAGCGAAAAACCGGAAGGCGAACTAGAAGACGCTACAAAAAAACCGAAATCAAGCTCGCAGATCTACCGCCACCAAGGCCAAAAATTCCGTGAAACAATACTTAGCCTGTGCCAACATTCGAATGCTAATATCGTTAAGAAGATAGATCACGGTGGGTTCCACTGCTGCGTTTGCCCTGAAAAATTCCCAGAAGCCGCCCAGTTAAAAGAACACTTCATCGACATCCACAATAGACAAGAAAAACTAAAAGAAATAGACTTTGCTGCCCTGAGTTGCTCGGCCAAAGTCGATGTCACGGGGCTCACCTGCGCACTGTGCCATCAAAAAGTTAACACACTGGAATTGATGATCGATCACTTGAATTTCGAACACCAGAAAACTGTGCACGAAGGATGCAACATCCTGCCGTTCAAATTTGACAGGCCAGGTTATTGCTGCGTGGCCTGCGAAGCCAAATTTGGGACATTCAAGTCGCTCCTGAGTCATATGCATGCACATTACAACAACTATACCTGTGACATCTGCCAGGCGGGTTTCTATAATAAGGGCAGCATGCGGTCCCATCGGAGGACACACTCTTCTGCAAATGACAGTTTCCCTTGCACGCACTGCTCTAAAACTTTCGTCACCGACATCATCCGCGTGAACCACGAGAAGAGAGTCCACTTGGGGCTGAAACCCTACACGtgccaccattgcccggaaaagtttcaggattactacgagcgcaacgatcactgcatagaagtccacggattgaaggatatgggcaactttcagtgtcaagcttgcgataagagatttaagcgctcatacgcgctgagagagcacAAGTTCTCTGATGCTGCCGATTTGAAGGAACACTTCAACGAACTTCACTCCCGACCAGAGGCTCTGAAAAAAGTGAACTTCAAACATCTGCTCCACAAGGCTAAGGTTGACATTACGGCACTCGTCTGTACTCTGTGCTTTGAGAAATTCGATGGTGTGCAACCGATCCTTGAGCACTTACGCCTGAAGCATGAGAAAATAACGCACGATGGCTGCAATATCCTACCATTCAAGTTCGACAATCCGGGCTACTGCTGCGTATTCTGCGAAAGCAATTTCGGCACGTTCAAATCGTTGTTGAGTCACATGCATACCCATTACAATAACCACACCTGCGATATTTGCGGGACCGGCTTCTTCAGCAAACAAGTCATGATGGTTCACAAGAAATCTCACACCGCCGTCAAAAAGGCGTTCGCTTGCAAGCATTGCGAGCAGAAATTCGATACCGATCTCTGCCGCGTGCTCCACGAAAAGAGAATGCATCTAGGGAAGAAGCCTTACTACACATGCTACTACTGCCCGGAAAAGTTCCACTGTTACTACCAACGGAATGACCACTGCGTAGAAATACACGGCTTAAAGGACATGAGCAACTTTCAGTGTCGGGCCTGCGACAAGAAATTTCGTCGCTCGTACATGTTGAGGTTGCACGTGCGTAAAGAGCATCTCTTGATGAAGACATACCCGTGCGGTGTGTGCGGCAAGAAACTGAAGAGTTCACAGGAGCTCCACGACCACATGATGATGCACAAACGCGAGCCGACCGAATTCGTTTGCGGAGAGTGCGATAAAACCTTCAACAGGAAGAGGACGTTGCAAATACACATGCTGACTCACTTTCCGCCTCAGCACGCGTGCGAGTTCTGCAACAAAGTTTTCTCCACAAAGTCTGGGTTTACGTTTCATTTGCGGAAACAGCACGGTGTAACTTTCATATCATCATTCTAA
Protein Sequence: MSFCARISTPNIWRSPSLCISAKKVVRPVKGVSVLKIPLNPAKPNVRKITRLVRKKPLTAPKSEKPEGELEDATKKPKSSSQIYRHQGQKFRETILSLCQHSNANIVKKIDHGGFHCCVCPEKFPEAAQLKEHFIDIHNRQEKLKEIDFAALSCSAKVDVTGLTCALCHQKVNTLELMIDHLNFEHQKTVHEGCNILPFKFDRPGYCCVACEAKFGTFKSLLSHMHAHYNNYTCDICQAGFYNKGSMRSHRRTHSSANDSFPCTHCSKTFVTDIIRVNHEKRVHLGLKPYTCHHCPEKFQDYYERNDHCIEVHGLKDMGNFQCQACDKRFKRSYALREHKFSDAADLKEHFNELHSRPEALKKVNFKHLLHKAKVDITALVCTLCFEKFDGVQPILEHLRLKHEKITHDGCNILPFKFDNPGYCCVFCESNFGTFKSLLSHMHTHYNNHTCDICGTGFFSKQVMMVHKKSHTAVKKAFACKHCEQKFDTDLCRVLHEKRMHLGKKPYYTCYYCPEKFHCYYQRNDHCVEIHGLKDMSNFQCRACDKKFRRSYMLRLHVRKEHLLMKTYPCGVCGKKLKSSQELHDHMMMHKREPTEFVCGECDKTFNRKRTLQIHMLTHFPPQHACEFCNKVFSTKSGFTFHLRKQHGVTFISSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -