Yplu002541.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- znf423
- Assembly
- GCA_947310845.1
- Location
- OX371219.1:9201939-9205235[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.4 1.3e+02 4.1 0.1 2 23 42 64 41 64 0.92 2 17 0.092 8.5 7.9 2.6 2 23 90 112 89 112 0.93 3 17 0.0012 0.11 13.8 0.3 2 23 135 156 134 156 0.96 4 17 0.0044 0.41 12.0 2.2 2 23 161 183 160 183 0.94 5 17 5.4 5e+02 2.3 0.3 3 21 189 207 187 208 0.89 6 17 0.04 3.7 9.0 1.4 1 23 215 238 215 238 0.94 7 17 0.0014 0.13 13.6 1.7 1 23 245 268 245 268 0.96 8 17 0.019 1.8 10.0 0.7 2 23 275 296 274 296 0.93 9 17 0.074 6.8 8.2 0.1 2 23 348 370 347 370 0.96 10 17 0.013 1.2 10.6 0.1 2 21 466 485 465 486 0.92 11 17 7.5 6.9e+02 1.9 0.1 2 23 577 599 576 599 0.84 12 17 0.059 5.5 8.5 0.2 2 23 623 644 622 644 0.94 13 17 0.0014 0.13 13.6 0.0 1 23 648 671 648 671 0.97 14 17 0.63 58 5.3 1.0 1 23 675 698 675 698 0.95 15 17 2.8 2.6e+02 3.2 0.4 1 23 703 728 703 728 0.89 16 17 0.00018 0.017 16.4 3.1 1 23 737 760 737 760 0.97 17 17 2.5e-06 0.00024 22.2 2.1 1 23 770 793 770 793 0.96
Sequence Information
- Coding Sequence
- ATGCAAGTATTTTTCTTCGTCTTAGGAGACGAAACCGACAAGTTTCCAACGGCAAGGGACAACGCTGTTTTCATATTGAAATATGCCACTGCGTATCCGTTCAGGATTCGCGGCAGATTCATGGTCTGTGTCTTCTGTCTGCGGGAATACGAAGATCCTGTCAAGTACAGAGAGCACATGGGTATAAAACATCAAAAGTTCAAAACTGCATCCGCAACGTACCATTGCGCGGCCACAGAGTATGTCAAAGCCGATTGCACTGACCTGCGTTGCAGAGAATGCCACACTCGTTTCGCATCCTTGGACGAGACATCTAAGCACATTCATGAAGTACACGACAAGAGGTTTAAACTGAATGGAGATATAGGCCTCCAAATATTCAACTTCGAACTGGATAAGTGGAACTGTGTCATTTGCAAAGAGAAGTTCCCTAATTTGGTGAAGCTTAATCGACACGTGACTACTCACTACCAGAACAGCACGTGCGACTTATGCGGAAAGTGCTACTTGAGCAAGAACTCGCTGAACGCTCACATAAAGTTCAGCCACTCTGAGGATCAAATCTGCCGAAAATGCAAAGCCAGGTTCCCAGACGTACAAAGTAAAAGGGACCACCTGAAAGTCTCTAAAAAGTGTTGGGCCTTCTGCTGCGTTCGTTGCGGTGAGCGTTTTATATCCTGGGAGTATAAAATGCAGCACCTGGACAAAGTCCACGGCGTTGCAAGACCCTCGTACGACTGCCCCGAGTGTGACGCTTCGTACAAGACGCGAAAAAAGTTCTACGATCATTATAACAAGAGCCACGCACCCGACAGTAGTTTAGTCTGCGGGGTGTGTGGGAAACAGTTCTCCTGCAGAAAGAATATGGAGAATcacgtggtcattcacactggcttgaagccgttcgagtGGTCCAAAAAGGATAAAGACCACACCGACCCTGGACCCCTTCTAATGACCCAAAATCGACTCCGCTCCAATGCGGAGATCGTCATAAAATACTCAACTGCGTACCCATTTAAAACGCGTCACAGCACTATACGTTGTTCGTATTGTTACGATGTTCTTAGCACCATGGAAGAGCTACGAGCCCACGTTAAGACAGATCATGCCGAACCAGAGTTAGCCACGGCATTCTACAAACTCTACGAGTACTTGAAAGTCGATATAACTGACATGAAATGTAAACTTTGCTGGATAGAGATACAGGACATAAATACCTTGATGTCGCATTTTCACACGGAACACAAACTCGAAGTAGACTTCGATGTACCGTTTGGCGTTTTTCCTTATAAGCAAATAGCGAGTAGAGAGTTCTTATGTGTCTGCTGTGATAAAGTCTTTCCTGAATTCGCAATATTTAACCGACATATTTGTGAACATTACAAAACTTTGCACTGCGAAAGATGTGACACCCCATTCGTCACTGAAGCAGCTTTAAGAAATCATAATAGAGTAGTCAAATGCTACAAGAGTAACTATAAAACTCGAGATATGAGCTCGGCTACAAATTCACGCAATAACGCCCAAATAATTTTGCAATGCTCCACCGCGTATCCATTTAGAATATGGCAGAAGAACTTCAATTGCATTTTCTGTCGAGTTCAGTCTATTGATCCGTGTGGCCTGCGACAGCACATGACTTCCAGACATGGAAACTATGATGTTAAAAAGGCTTTCTACAAAAGATTGGGGAAAGACTATGTTAAGATCGACATCACTGACCTGCAATGCAAACTCTGCTTGGGCCTTATTTCCGACCTCGATGACTTAGTGAAACATTTGAAAGACGTCCACCAGAAACCTTTAGTATTAGATGCCCAGTTAGGCGTTCTTCCGTTTATTCTCTCTGATGGGTCTAAATGGAAATGCTTTAAGTGCCCAAATGAGTTCCCTGATTTTGAAGCTCTAAGCAAACATACATCTGGGCATTACTACAACTTTGTTTGCGTCACATGCGGGGAAGGTTTCATTACCGAACAAGCTTTACTTGCCCACACTAAAGTGCCCCACGAAAATAAGTTTAAATGTAATAGATGCGTGGCGGCTTTCTCGACCATGGAGGAAAGAAGTGAACATAACAAAACAAAGCATTCTTCGCATCTTTATACCTGTGGTTATTGCAAAGATAAGCCAAGATTTGCGAGTTGGAATCTTAGGAAAAGGCACTTGATAGAAATGCACAATTTTATGCCGGGCGCTGGAATGTACGAATGTACGACGTGTCAGAAGACATTTAAAACTCGCTCGGCCAAGTACAATCACATGGAACGGACGCACAGAATGAAAAAAGACGGCGATATAAAATATTCCTGTCCACACTGTCCTAGAAATTTTACTACAAAATCTACGTTAGAATCTCATATTGTTAAGAAACACGAAGACATTTAA
- Protein Sequence
- MQVFFFVLGDETDKFPTARDNAVFILKYATAYPFRIRGRFMVCVFCLREYEDPVKYREHMGIKHQKFKTASATYHCAATEYVKADCTDLRCRECHTRFASLDETSKHIHEVHDKRFKLNGDIGLQIFNFELDKWNCVICKEKFPNLVKLNRHVTTHYQNSTCDLCGKCYLSKNSLNAHIKFSHSEDQICRKCKARFPDVQSKRDHLKVSKKCWAFCCVRCGERFISWEYKMQHLDKVHGVARPSYDCPECDASYKTRKKFYDHYNKSHAPDSSLVCGVCGKQFSCRKNMENHVVIHTGLKPFEWSKKDKDHTDPGPLLMTQNRLRSNAEIVIKYSTAYPFKTRHSTIRCSYCYDVLSTMEELRAHVKTDHAEPELATAFYKLYEYLKVDITDMKCKLCWIEIQDINTLMSHFHTEHKLEVDFDVPFGVFPYKQIASREFLCVCCDKVFPEFAIFNRHICEHYKTLHCERCDTPFVTEAALRNHNRVVKCYKSNYKTRDMSSATNSRNNAQIILQCSTAYPFRIWQKNFNCIFCRVQSIDPCGLRQHMTSRHGNYDVKKAFYKRLGKDYVKIDITDLQCKLCLGLISDLDDLVKHLKDVHQKPLVLDAQLGVLPFILSDGSKWKCFKCPNEFPDFEALSKHTSGHYYNFVCVTCGEGFITEQALLAHTKVPHENKFKCNRCVAAFSTMEERSEHNKTKHSSHLYTCGYCKDKPRFASWNLRKRHLIEMHNFMPGAGMYECTTCQKTFKTRSAKYNHMERTHRMKKDGDIKYSCPHCPRNFTTKSTLESHIVKKHEDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -