Yplu007733.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371220.1:5147536-5161064[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00077 0.071 14.4 2.3 1 23 171 193 171 193 0.99 2 11 0.073 6.7 8.2 0.4 1 14 200 213 200 223 0.78 3 11 0.076 7.1 8.1 7.3 1 23 227 250 227 250 0.96 4 11 0.0046 0.43 12.0 0.9 3 23 258 279 257 279 0.95 5 11 4.4e-05 0.004 18.3 0.1 1 23 283 305 283 305 0.98 6 11 0.0096 0.89 11.0 2.5 2 23 313 335 312 335 0.94 7 11 0.00071 0.066 14.5 1.2 2 22 342 362 341 366 0.92 8 11 1.6e-05 0.0015 19.7 2.2 1 23 374 397 374 397 0.97 9 11 0.012 1.1 10.6 7.5 1 23 403 426 403 426 0.97 10 11 6.6e-05 0.0061 17.8 1.5 1 23 435 457 435 457 0.97 11 11 0.0084 0.78 11.1 0.9 1 23 463 486 463 486 0.96
Sequence Information
- Coding Sequence
- ATGGTTTGCTACGAGTGCCAAGCAAAGCTCAACAATTTTGTGAAGTTCCGGAGCCGTGCACTTTGCGCTGAGCAATTTTTATCATTTGAACCCAGCGGCCAGTTACCCCGGACTAAAATTTTCTCCCCTTCCGATATTAAATGCCTCTCCAATCTGACGCAAACGGTTATATCGGTACAAGCCACCATTTGCATAGACTGTGACCTGGTAGAGGTGAAACAAGATGTCTTTCCGGAGCTAGAAGTGAAGACGGAGGCTGTGGAATTTACTGCGGAACCTTTATTTGTCGAAGAACTGAAGTTAGAGGGAAATATTTCCAATAATGATGAATACATGACAAATGAGGGGGTTGATGATACAAAGCCCAACACGAGCTCTGATGATGATGTGCCACAGCAAATCGAGGACCCTCTCATCACCAAGCACTATACTGCGATCCACATGGAGTTAGGCGAGGTACTTTCCCACATGGAGACTACCAGAAGCCTGAAACGCTACAAAAGCGCTCGGTACAAATGTGACCATTGCGCTCAGACCTTCATCACGGAGCCACAGTACAGACAGCATGCGAAACGACACGCCGACGAAGAGGGTAGTTTTAAATGCGAGGTCTGCGAGCAGAGATTCAGAAAGAATAGCAGGGCGCTGAAATTACACACTGCGGCGCATTACACCCGCTACGCGTGTCACCACTGCCCTCGCAGCTGCTTCAGTTACTCGCAGATGTATTTGCACTACAGGAACGTACACGACGAGCAGACGATGCGATTCTGCGCCAAGTGTCCCGCCAGCTTTCCGAGCAACAAAGAGCTGCTGCATCATAAACTGCGCGCGCACAGACGCAAGTATCCGTGTCCCAGCTGCGACCGCCAGTACACGTCCAGCGTTGGTCTGTGGCGCCACAGGCAGGTGCACGACGATTCATTGCCCGAGCTAGAATGCAGTTTCTGCCACAAGAAGTACAAAGGGGAGTTCTTTTTGAAGAGTCACATTCGGGATGTTCATGAAATGAAACCCGACTCGTATTGCGTCGAGTGCGACCTCCAGTTCAAGAACCCCTCTCAATACAGGCAGCATCTGAAACGCACCAACAAACACATCCCGCTAAAGGACTCCAAGTACGAATGCGACCATTGCCAGAAGCTATTCGCTCAGAAACACAATTTGGCCCAACACATTGAGGTCACGCATCTAAAGCTGTCGAACCACAAGTGTGATATGTGCGGGGAAAGGTTTCACACGAAGCGCCACGTCGTTATTCACAAGCGGAAAAGGCATACCGACGCGGCTAAGAGCAAGAAGCACGTGTGCCACATTTGCGCGAAGGCGTTCGCTTTAAGGAAATCGCTTACAGAACACATGAATATCCATCTTGGCGTGCGTCCGTACCAGTGCAAGCTTTGCGAGGCGAATTTCGCGTACGACTCGGCTTTATATCACCACACTCAGCTAGTCCACTTGAAAAAGTCTAGGAAGAGGAAAGTCGTTGGCAAGTGA
- Protein Sequence
- MVCYECQAKLNNFVKFRSRALCAEQFLSFEPSGQLPRTKIFSPSDIKCLSNLTQTVISVQATICIDCDLVEVKQDVFPELEVKTEAVEFTAEPLFVEELKLEGNISNNDEYMTNEGVDDTKPNTSSDDDVPQQIEDPLITKHYTAIHMELGEVLSHMETTRSLKRYKSARYKCDHCAQTFITEPQYRQHAKRHADEEGSFKCEVCEQRFRKNSRALKLHTAAHYTRYACHHCPRSCFSYSQMYLHYRNVHDEQTMRFCAKCPASFPSNKELLHHKLRAHRRKYPCPSCDRQYTSSVGLWRHRQVHDDSLPELECSFCHKKYKGEFFLKSHIRDVHEMKPDSYCVECDLQFKNPSQYRQHLKRTNKHIPLKDSKYECDHCQKLFAQKHNLAQHIEVTHLKLSNHKCDMCGERFHTKRHVVIHKRKRHTDAAKSKKHVCHICAKAFALRKSLTEHMNIHLGVRPYQCKLCEANFAYDSALYHHTQLVHLKKSRKRKVVGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01546980;
- 90% Identity
- -
- 80% Identity
- -