Yplu007683.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371220.1:4133051-4159919[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0016 0.15 13.4 0.5 1 23 255 278 255 278 0.96 2 12 0.028 2.6 9.5 3.5 1 23 286 308 286 308 0.96 3 12 2.8 2.6e+02 3.2 0.2 1 20 312 331 312 333 0.75 4 12 0.0031 0.29 12.5 0.2 3 20 348 365 347 367 0.93 5 12 0.0094 0.87 11.0 2.0 2 21 374 393 374 394 0.92 6 12 0.00013 0.012 16.9 1.1 2 23 414 435 413 435 0.95 7 12 0.00012 0.011 16.9 0.2 1 23 440 462 440 462 0.98 8 12 0.00013 0.012 16.8 4.5 1 21 471 491 471 492 0.96 9 12 0.00075 0.069 14.5 0.4 3 23 506 527 505 527 0.92 10 12 0.033 3 9.3 0.1 1 23 533 556 533 556 0.87 11 12 0.026 2.4 9.6 0.5 3 19 570 586 568 587 0.88 12 12 0.038 3.6 9.1 0.9 1 23 600 623 600 623 0.96
Sequence Information
- Coding Sequence
- ATGAACGAAATAAACATAAATATTGAAGGCTACAATGTAAATGGCATCTGTGTTGGATGTTTAAACTATAACAGAAAAATGTTTTACGCGGACGATGTGAAAGAATGTTTCAGGATTTTGGGAAATATCGACGTGCCGGACGGGCTGACAATACAAGTATGCTGGGAATGCCTGGCCGCTGTGCGGTCGGTGAGGCTATTTCAAGCCCAGATCATGAAGTCCTATGTTATACTCATGGACTATTCCAGACTGCACACATTTCTGGACTCGCCCGGTGATCTGTCCCGCCACGCCGCTACCCGACTAATGCCCACCCCCCCAGTCGTGGGCTCCAACCTGCAGAGTGCCCCAGAGGAGGACGGGCGGGAGGAGGGACAGGAAGAAGACGAGCTGGAGGTGGAGGTCAAGCCTGAGGTCGAGGTCAAGGTAGAATTTGAAGCCTCGGACCTGTTTGCAGACCAGGCGGCGAAACTGGAAAGCGACGACTCCGACTCACCCGATATTCAGTTCGACGTTCCGGCTGACTCGTCTGATGAGGAGGTGCAGTTAGCCCAGCTCAAGAGGAAGAAGGAGGCTGTTGAGAAGGTGAAACAGAGAAAAAAGCGCCCAACATCCCAGAAACCCACCACGAAGCCGACACAGCAGATGAGAAAGCTCAAGAACGTGCCTTTAGACTGTGTGGAACTCGTGACTCTAACCGAAGCGGACATGCGAGTGGTGAGAGCAGACGACTTGCGCTCCGTTGAGTTCGTCAATCTGAAGTACAAGTGCACTGACTGCGTTATGGGGTTCGGCTCTAAGAATCTCTTGAAGATGCATCTGAATGGGAAGCATCGGCCGAAAGTGCCAAACAGCCACCAATGTGACGTGTGCCTCTCACACTTCATAACAAAGGAAAACCTCTCCAACCATCGCTCCCTGCATGCCAGCGCTTACGTCTGCAAGCGTTGCGGACTTCGTACTACTCTGAAGAGAGTCATACTGGAACACTTGAAGCGGTGTTCCGACAGCGCTGAAAGTGCGGAGAGTGTTGGCGGCGCTTGCGCCAAGTGCGGGATGACTTTCAAAACAAAATCCAGGCTGTCATACCACAGAGCGGTGTGCTTGCAGGAGAAGCCACAGTGCGACTGCTGTGGGAAAGTGTTCGCCAACAAACTCACACTCAAACATCATCTCAAAGCTGCGTTGGGTGGTAATCCGGACGCGCAAAGCAAGGAGCCCAAAGAGAAGTTGCATATCCAGTGCAAGGGCTGCGACAAAGTATTCCATACGAGAAAAAGCTACCGGGCGCACGTCGTGATCCACGACGGCCTCCAATACCCGTGCCCCGTGTGTGGCAAACTGTTCCAGTGGAAAAGGAATCTCGCCCGACACCTGCGGAACCACGCCGAAAGGGAGGCCGGTGCGAGACACGAGTGCCGTGAGTGCGGCAAACGGTTTTCCAGCCGCGATTGCTACAACAACCATATGCGATTTAGCAAGCAACACGTCTCCGAGGATATGTTCGTTCACGGGTGTGAGTACTGCGGCAAGAAATTTGCGACCAAGTGGTGTTTGGTTGACCACGTAGACTGGGAACATCTCAAGAACATCAAATACCAGTGCTCCGTGTGCTTGAAGGCTTTCAAGACGGCGAAGATAATGGTAGCACACGTGAACAACATTCACGAGGGGAAGAAGAAGACTGAAATGGAGGGCGAACACCTGTGTGATATCTGCGGAAAATCCTACAAGACTGACAAGCGACTGAAAGGCCACGTCTGGGCTATGCACACACACCGGGCCACTGTGAAGAGCTTCAAGTGTAAACTTTGCCCGGCCACCTTCACCTGGCAGACCTCCATATACAAGCATGTCAAAATGATGCACTGCAATAAACGCTCCACCAAGCCTCGCCCGCAACCGAAGCCCGAGCCTTACCAGCCGCCGGAGTTGACCAACCGAGTTTACTTTCAGCAGGCTTTGCTGCCCAATGTCCAAGGTTTGGTCCCGGACCTGATGTGA
- Protein Sequence
- MNEININIEGYNVNGICVGCLNYNRKMFYADDVKECFRILGNIDVPDGLTIQVCWECLAAVRSVRLFQAQIMKSYVILMDYSRLHTFLDSPGDLSRHAATRLMPTPPVVGSNLQSAPEEDGREEGQEEDELEVEVKPEVEVKVEFEASDLFADQAAKLESDDSDSPDIQFDVPADSSDEEVQLAQLKRKKEAVEKVKQRKKRPTSQKPTTKPTQQMRKLKNVPLDCVELVTLTEADMRVVRADDLRSVEFVNLKYKCTDCVMGFGSKNLLKMHLNGKHRPKVPNSHQCDVCLSHFITKENLSNHRSLHASAYVCKRCGLRTTLKRVILEHLKRCSDSAESAESVGGACAKCGMTFKTKSRLSYHRAVCLQEKPQCDCCGKVFANKLTLKHHLKAALGGNPDAQSKEPKEKLHIQCKGCDKVFHTRKSYRAHVVIHDGLQYPCPVCGKLFQWKRNLARHLRNHAEREAGARHECRECGKRFSSRDCYNNHMRFSKQHVSEDMFVHGCEYCGKKFATKWCLVDHVDWEHLKNIKYQCSVCLKAFKTAKIMVAHVNNIHEGKKKTEMEGEHLCDICGKSYKTDKRLKGHVWAMHTHRATVKSFKCKLCPATFTWQTSIYKHVKMMHCNKRSTKPRPQPKPEPYQPPELTNRVYFQQALLPNVQGLVPDLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01543269; iTF_01546955; iTF_01544275;
- 90% Identity
- -
- 80% Identity
- -