Basic Information

Insect: Yponomeuta plumbellus
Gene Symbol: -
Assembly: GCA_947310845.1
Location: OX371220.1:4807329-4832112[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0056 0.52 11.7 2.1 1 23 257 279 257 279 0.94

2 10 0.0007 0.065 14.5 0.2 2 23 287 308 286 308 0.96

3 10 9.6e-05 0.0089 17.3 0.4 2 23 341 363 341 363 0.98

4 10 0.0001 0.0096 17.2 3.8 1 23 367 390 367 390 0.98

5 10 0.00074 0.068 14.5 2.9 2 23 397 419 396 419 0.96

6 10 0.015 1.4 10.4 0.4 3 21 432 450 431 455 0.93

7 10 0.00023 0.022 16.1 3.5 1 23 463 486 463 486 0.96

8 10 0.00012 0.011 16.9 2.4 1 23 492 515 492 515 0.98

9 10 5.5e-06 0.00051 21.2 0.5 1 23 523 545 523 545 0.98

10 10 0.00018 0.017 16.4 1.3 1 23 551 574 551 574 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0056	0.52	11.7	2.1	1	23	257	279	257	279	0.94
2	10	0.0007	0.065	14.5	0.2	2	23	287	308	286	308	0.96
3	10	9.6e-05	0.0089	17.3	0.4	2	23	341	363	341	363	0.98
4	10	0.0001	0.0096	17.2	3.8	1	23	367	390	367	390	0.98
5	10	0.00074	0.068	14.5	2.9	2	23	397	419	396	419	0.96
6	10	0.015	1.4	10.4	0.4	3	21	432	450	431	455	0.93
7	10	0.00023	0.022	16.1	3.5	1	23	463	486	463	486	0.96
8	10	0.00012	0.011	16.9	2.4	1	23	492	515	492	515	0.98
9	10	5.5e-06	0.00051	21.2	0.5	1	23	523	545	523	545	0.98
10	10	0.00018	0.017	16.4	1.3	1	23	551	574	551	574	0.95

Sequence Information

Coding Sequence: ATGCAAGAATCTACGGTTCGCTGGCGTGCAGTCACCATTACAGTGTGCTGCACTTGCTTATCCATGGATAGAAAGCTCTTCTCGCTCAAAAACTCACCGCAGTTATTACAAATCTGTAGTGGTCTTAAGTTGTCACACAAAGACTTGGTGTGCTTTGAGTGCCGGGCAAGACTACAGAATGTTCTGAAATTCCGAAACTGCGCTCTCCGGGCCAAAGGATTTCTGTCAAGCTTGGCTTTCCAGAGGTTAATTAAGGTACCTGACCTGAAATGTCTCTCAACCCTGACCCAAATTGTTCTACCGCTAGAAAAAAAAATCTGCATAGAGAGCAACTTACCCGTTGTGAAAGAAGAAATACCGGAACCAATGGAGAAGGTTGAGTTAGAAATTGAACCTATGTTCGTTTCCACAAACGAGAACTTGAAGACAGAGGAGAATATGGTCGCGAAAGACTTCGAGTTGAAAATGGAGCCGGAAGACGACGACTGTGACGACACTGGCGCTGCCTTCGGTAACCGCAGTGGTCAGGAGCTACCAGTCGTCTGGGAGATGCCAGTTGACCAGAAGGCACGAGTCGGCCGGCAGGTACCAGCTCGCCAGGCAGTATCAGCTGGTCAAAAGCGGAAAGTACGCGCCACAGTCAGCCGTCCAAAGAGGCCGGACAAAGAAGCTTCAACGTCATACTTCAACGTGAAGCAGATCGATCACGCCGAGGCGGTCGGCTTCCTAGCGCGCGAACGGGAGACCGACGCCTTCAAGCGCGCCCCGTTCAAGTGCGACAAGTGTGCGCTCACCTTTAGAACCGAGAAGAGTTTCAAAACGCATAGTGCACTGCATAGTGAGAAACGAGGCTCGTTAGTATGCGGCATTTGCGAGCAACGCTTCAAAAAATCCCCTGACTTGACAATTCACACCGCCAAACATTACAACCGCTACGACTGCACGCACTGCGCCCGAGTCGAGTACAACCGCGCTCGCATGGAGGAACATTACAAACGGAAGCACGACCAATCGTCGCGACAGTGCCCCAAGTGCCCCGAGACTTTCACGAGCTACGTAGACATGTTGCAACACAAGCGGACGGCTCATCCAACCGAGTTCACGTGCGAACACTGCTCTCGCGTCTTCTCCGCCAATTATAAACTACAGTACCACATGCAAAGGACACACACGGTATTGCCTCTGCTGGAGTGTGAGGTCTGCCATATAGAATGCAAGGGACAACACAATCTGCAGGTGCACATTCGGAAGGCTCACACGAAGGAGCCAAGGGGCCCCAACGAGAACGCGTACTGCGCCGAATGCGACATCCAGTTCAAGGACGTGTACCAGTACAGATCGCACATCAATAACACGTCGCGACATGTCGCCGCCAGCGCTTTCAAGTACGAGTGCGACTACTGTGGCAGGAAGTTTGTCCACAAACAGTATGTGAGTCACCACATCGAATCGATGCATCTCAAACTGGCCAAGTATAAGTGCGATGTCTGTGATCAGAGCTTCCGGACTTTGGTGTACAGGAACCGCCATAAACGGTCGCAGCATATGGACAAACCGCGCAGGAAATTCATCTGCAACATTTGCGGGAAAGGTTTCACGGTGCAGAAGTCGCTTGATCAACACACTAATACGCATCTCGGAATCCGCCCCTTTGTCTGCAAGCACTGCGACGCGACGTTCACTTACTCCGCTGCCCTCTACACCCACAACCGGCTCGTGCACTTGAAGCGGAAACGCTGA
Protein Sequence: MQESTVRWRAVTITVCCTCLSMDRKLFSLKNSPQLLQICSGLKLSHKDLVCFECRARLQNVLKFRNCALRAKGFLSSLAFQRLIKVPDLKCLSTLTQIVLPLEKKICIESNLPVVKEEIPEPMEKVELEIEPMFVSTNENLKTEENMVAKDFELKMEPEDDDCDDTGAAFGNRSGQELPVVWEMPVDQKARVGRQVPARQAVSAGQKRKVRATVSRPKRPDKEASTSYFNVKQIDHAEAVGFLARERETDAFKRAPFKCDKCALTFRTEKSFKTHSALHSEKRGSLVCGICEQRFKKSPDLTIHTAKHYNRYDCTHCARVEYNRARMEEHYKRKHDQSSRQCPKCPETFTSYVDMLQHKRTAHPTEFTCEHCSRVFSANYKLQYHMQRTHTVLPLLECEVCHIECKGQHNLQVHIRKAHTKEPRGPNENAYCAECDIQFKDVYQYRSHINNTSRHVAASAFKYECDYCGRKFVHKQYVSHHIESMHLKLAKYKCDVCDQSFRTLVYRNRHKRSQHMDKPRRKFICNICGKGFTVQKSLDQHTNTHLGIRPFVCKHCDATFTYSAALYTHNRLVHLKRKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01545987;
90% Identity: -
80% Identity: -