Basic Information

Insect: Yponomeuta plumbellus
Gene Symbol: -
Assembly: GCA_947310845.1
Location: OX371219.1:9705053-9709484[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.12 11 7.5 0.0 2 20 251 269 250 271 0.94

2 9 7.3e-06 0.00068 20.8 0.2 3 23 298 318 296 318 0.96

3 9 1.8e-06 0.00017 22.7 0.2 1 23 322 344 322 344 0.98

4 9 0.069 6.4 8.3 0.7 1 23 349 372 349 372 0.94

5 9 0.16 15 7.2 0.4 1 23 378 401 378 401 0.92

6 9 0.0002 0.019 16.2 1.2 1 23 408 431 408 431 0.98

7 9 2.7e-05 0.0026 19.0 2.7 1 23 437 459 437 459 0.98

8 9 4.6e-06 0.00043 21.4 3.1 1 23 465 487 465 487 0.97

9 9 9.4e-07 8.7e-05 23.6 1.0 1 23 493 515 493 515 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.12	11	7.5	0.0	2	20	251	269	250	271	0.94
2	9	7.3e-06	0.00068	20.8	0.2	3	23	298	318	296	318	0.96
3	9	1.8e-06	0.00017	22.7	0.2	1	23	322	344	322	344	0.98
4	9	0.069	6.4	8.3	0.7	1	23	349	372	349	372	0.94
5	9	0.16	15	7.2	0.4	1	23	378	401	378	401	0.92
6	9	0.0002	0.019	16.2	1.2	1	23	408	431	408	431	0.98
7	9	2.7e-05	0.0026	19.0	2.7	1	23	437	459	437	459	0.98
8	9	4.6e-06	0.00043	21.4	3.1	1	23	465	487	465	487	0.97
9	9	9.4e-07	8.7e-05	23.6	1.0	1	23	493	515	493	515	0.98

Sequence Information

Coding Sequence: ATGGACACTGAAATTATGGTGGAGACTTTGCCGCTACTAGGTATATGCAATTTGTGCCTAAATGAAGGCGCAGTGAAAAGTATGTTACTCGCATATAAAATCAACGGGAGAAAGGAAATTTACTCGGAAATGCTCGTAAAATGCTACTCTATAGACTTGACTGCCATGGATCTCGGTGACACGAAGAAGCTGATATGCGACGCATGCGTGGAGAAGCTGCGAGAAGCGAGTCTGTTCCGGAGCCAAGTGGACACCTCACTGCAGACTCTACAGGCCGCCGCTAAGCTGCACGGCGTAAAAAGGGAGGAGCTGCCAATTGACGAAGGCTCCGACGCGGCTTTGGATGATCTGGGGTGCGCTGACGACTTCTTCCATGACGACGCTGATGCAGGCGCCCTCCTCCCGGATTTGGACCTCAAAATAAAAACCGAAGAAGCGATATTCCCCGAGAAGCCGCCGAGAAAGAAAAGGGGGAGGCCGCTCAAAAGCAAAAAGCACTCGAAGCTGATCAAGTTCACCAAATCCGACCTGGACACGAGCGAAACTGAAACCATGTTGAAATCCGGCCTGATCCCGTTCAAACTCCGTCAAAGCGGCACGTTCTCTTGCGCCGTGTGCGCTGAGAAACACAAGACTCTAGACGACTTAAAGAAACACTGCTCCGGGCACAGCCAACAGATGCTCCACGTAGGCTTCAGAAAAATGATGCTCTACAACGCCCAGCGGTTCCACAAAAGCTCCGACAAACTCCGCTGCAAGATCTGCACCGCAGACATCTCCAACTACGACGAGCTCAAAGCCCACCTGGACAACTGCAGCCGTCTGCAGTTCAAATCCGAATCGTCCAAATGGAACAACCTGCCCTTCAAGCTGGAGAAAGACCAGCTGGACTGCCCGATCTGCAAGAAGAAGTTCATCAACTACGTCTCTCTGAACATGCATATGAACGTCCACTACCCTAACTACATCTGTGAGACCTGCGGGAAGGCGTTCGCGTCCAAAGCGAGACTCCGAGGCCACATACGGACTCACGAGATTGGGGAGTTTCCCTGTAGGTACTGCGAACAGGTCTTCGACAGGGTAACCAAGCGGGAGAACCACGTCTCCAAGGAGCACAAATCTGGAGTCCGGTACGCTTGCAAGCGCTGCAATATCAGTCTCACATCGTTCTACGCTCGCCAGAAGCATTTAGCAGAGGTCCACAACGAGGAATTGAAACGGTACAAGTGTAAAGCGTGCTCGCAGAGCTACATAACACCTGGACATTTGTCGAGTCATGTCAGGAGGGATCATTTGAACGAGCGTAATCACAAGTGTGACAAATGTGACTTGGCGTTCTATACCAAGAATTCTCTCAACATGcacatgattaagcatgacggggagcggatacactcttgtccggtgtgtcaaaagtcctatcagagaaagaaaacgcttcgggagcatatgcggatacataataacgataagaggttcgtctgccctatatgcggtcgtgcgttcacgcagaagtgtaccttaaaaggacatcttaaggtacatgatAGAAAGTTGGATTTGGACGATAGAGTCGTTCCGTTGCATTCGGTTTGA
Protein Sequence: MDTEIMVETLPLLGICNLCLNEGAVKSMLLAYKINGRKEIYSEMLVKCYSIDLTAMDLGDTKKLICDACVEKLREASLFRSQVDTSLQTLQAAAKLHGVKREELPIDEGSDAALDDLGCADDFFHDDADAGALLPDLDLKIKTEEAIFPEKPPRKKRGRPLKSKKHSKLIKFTKSDLDTSETETMLKSGLIPFKLRQSGTFSCAVCAEKHKTLDDLKKHCSGHSQQMLHVGFRKMMLYNAQRFHKSSDKLRCKICTADISNYDELKAHLDNCSRLQFKSESSKWNNLPFKLEKDQLDCPICKKKFINYVSLNMHMNVHYPNYICETCGKAFASKARLRGHIRTHEIGEFPCRYCEQVFDRVTKRENHVSKEHKSGVRYACKRCNISLTSFYARQKHLAEVHNEELKRYKCKACSQSYITPGHLSSHVRRDHLNERNHKCDKCDLAFYTKNSLNMHMIKHDGERIHSCPVCQKSYQRKKTLREHMRIHNNDKRFVCPICGRAFTQKCTLKGHLKVHDRKLDLDDRVVPLHSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01546910;
90% Identity: iTF_01561355;
80% Identity: -