Yplu002498.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371219.1:8748556-8749767[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00041 0.038 15.3 0.1 1 23 77 100 77 100 0.95 2 10 0.027 2.5 9.6 0.1 2 23 126 148 125 148 0.94 3 10 0.0003 0.028 15.7 0.4 1 23 171 193 171 193 0.98 4 10 7.6e-05 0.007 17.6 0.7 1 23 197 219 197 219 0.98 5 10 0.00058 0.054 14.8 2.1 1 23 224 247 224 247 0.95 6 10 0.0074 0.69 11.3 0.9 3 23 256 277 254 277 0.95 7 10 4e-06 0.00037 21.6 0.7 1 23 283 306 283 306 0.98 8 10 7.7e-06 0.00071 20.7 2.9 1 23 312 334 312 334 0.98 9 10 4.3e-06 0.0004 21.5 4.1 1 23 340 362 340 362 0.97 10 10 2.7e-05 0.0025 19.0 3.0 1 23 368 391 368 391 0.97
Sequence Information
- Coding Sequence
- ATGCCAAGCCCCGACATACGCAACGATTTAGAGAAGAAATCCGTCACGCTAGGCCAAAAGAAGGTGCTGGTTGGCAAGGAAATCACCCTGAAGGAGTCGAAAGGTCGAGAAAGGATAAAGGTTTCGTGGAAGACCAGTAGTTCCGTCAAAGAGAAACACTTGCATAACTTGCAGACTATCATGGCGTTTTCCAATGCCGTTATATTCAAGAACAAAGACCTCTTAGGATATATTTGTGGCCATTGCGATCTAGCATACCCAGATCCGAGAGACTTACGCGAGCATACAGAGAGCCAACACAAGAAAGAACGTCTCGTCTGTCGATCTTCCATCGACATGTCCTCGGAGACAACAaagctggatattaacgacttacaatgcactctttgtgacaaggaaatggcgaacttgaacgagttaaaagaccacctagtcaaagcccacaacaagacgatacacaacgacataaaggatcacattctgcagtacaagttgactaaaggtgacgtgtacgactgtgcgctttgcccagccacgtacgagactttcaagatgttaaaacagcacatgaacacgcattacagtaattacatttgcaccgtatgtaacactgcattcgccacgaccagatccttgaattcccataagaaaatccacatagagggcaacttcaaatgcgaaaaatgtgacaaagtgttctctaatatgaccaaaaggcagtatcacgaaaagatggcgcacttaggcgcgaggaatataagcaactgcgtcttctgcaatcagccgtttagaagttactaccagaggaatcagcacatgatacgagtgcacaacgcgcaagcccagtacaagtgcaacatctgcgataagggttacatcctcaagtctttgctaatgaatcacattaagaaaaaccacctgatggaaaagaacttccagtgcacggaatgcggtcacaggttttttagcaaaaaggctctgaaagctcacatggtcaaacatacgggcgagcgaaacttcgcctgcgctgtctgccacaagtgtttcgcgagaaaattcacgctcacagagcacatgcggatccataacaacgataggcggttcaaatgtaccgtttgcgacttgtcctttgtccagaagtgcagtctgaagagtcatctattgtcgaatcacggAATAAGTATGGCTGCTAGCGAAATCTCCGCTGTCTGA
- Protein Sequence
- MPSPDIRNDLEKKSVTLGQKKVLVGKEITLKESKGRERIKVSWKTSSSVKEKHLHNLQTIMAFSNAVIFKNKDLLGYICGHCDLAYPDPRDLREHTESQHKKERLVCRSSIDMSSETTKLDINDLQCTLCDKEMANLNELKDHLVKAHNKTIHNDIKDHILQYKLTKGDVYDCALCPATYETFKMLKQHMNTHYSNYICTVCNTAFATTRSLNSHKKIHIEGNFKCEKCDKVFSNMTKRQYHEKMAHLGARNISNCVFCNQPFRSYYQRNQHMIRVHNAQAQYKCNICDKGYILKSLLMNHIKKNHLMEKNFQCTECGHRFFSKKALKAHMVKHTGERNFACAVCHKCFARKFTLTEHMRIHNNDRRFKCTVCDLSFVQKCSLKSHLLSNHGISMAASEISAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -