Yplu003970.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371195.1:3988979-4015622[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.4 4.1e+02 2.6 0.5 2 23 269 290 269 290 0.75 2 13 0.09 8.4 7.9 0.1 1 21 295 315 295 319 0.92 3 13 0.0075 0.69 11.3 3.5 2 23 427 449 426 449 0.92 4 13 0.0016 0.15 13.4 0.0 1 23 455 477 455 477 0.97 5 13 0.03 2.8 9.4 0.2 1 23 486 509 486 509 0.88 6 13 0.00016 0.015 16.6 2.0 1 23 514 536 514 536 0.98 7 13 3.5e-05 0.0033 18.6 0.8 1 23 542 564 542 564 0.98 8 13 7.9e-05 0.0073 17.5 3.9 1 23 570 592 570 592 0.98 9 13 1.6e-06 0.00015 22.9 0.5 1 23 598 620 598 620 0.98 10 13 0.0003 0.028 15.7 4.7 1 23 626 648 626 648 0.99 11 13 0.0019 0.17 13.2 1.1 1 22 654 675 654 675 0.96 12 13 2.5e-05 0.0023 19.1 0.5 1 23 682 704 682 704 0.98 13 13 5.9e-06 0.00055 21.1 3.6 1 23 710 733 710 733 0.96
Sequence Information
- Coding Sequence
- ATGGATGTCTTGCTTTATAATTCCGCAGTGTGTAGATTATGTGGTGAAGAAAATGAAAATGGAACATTTCTGTATGCTGATTCTGAAAACGAAGAAAATTTTTGTAATTTGATCAACACTTACTTGCCTCTAAAGGTTTCTGACGATGGACAGCTTCCACGTACCATATGCCCTGGCTGCACCATCCAGGTTGAAGCTACCGTGGAGTTCCTAAAATTGATAATCAAGGGACAGAAAATTATTAGAGAGCTCCACAGCGATGAGAAAACTTACAGCAAATCTCTAGTACAGAAGTTGGATACTTCAGAAACCGACCATCCTGAAAAACTATACTATGAAATTAGCACTAGCAATGGTGCCTACCAATTGGAGCACCCCATGTCGCTTCAGGCTGCTGGATTGGACAAGCCAAAGCGGAAAAGAGGTCGACCCCCAAAGAAGCCCAAAACTCCCGAGGAGTTGGCTGCAGAAGCTGCAGAGAGGGAGAAGGAGCTGGCCAGGATTCAGGCTTCGAGGGAAGCCAATGACACTAAGGAACCCACTGGGAAGCGACGTAGGAAGACACCAACAAGATTCAGGGAGGCTGTTCAGGGCAAAGAATTGGAACGGATACTTAAAGACGAGGGCGTTATAGGCCCTGAGGAGGTCGACCCGGATGGGAAGCCTGACGAGCCGGGCTCCTGCCCGCCCGTCGTCAAGCTTCCCGAGGTCATCGGCCACCTGGAGACGTCAGGCGAACCCGTCGTTGTGCTGCAGGGGAAGGGTCGCGGCAGACCCAAAGGCCGCATGCGTCCGACGCGTGAGCAGTGCGCCATATGCGGCATGGAGTTCTCGTGCGTTGGCCGCTACATGTCCCATATCGCACAGCACGGGCCCGTCCTCTACCAGTGCGGAGAATGCGGCATGGAGGCTTCCACGCGTCTGCTCTTCACTCAGCATCAAAGCGACACCGGCCACACGGGGCAGAAAGTGATTCGTCTTAAAAATGAGAAACGCATTTTGCCTCCAGAACCCGATCCTCTCGATATGGTGGAAACAACGATACTCCCCGACCTAAACCCGGCGAGTCTCAACCTTATGCCTATAGGCACCAAGGTCGACATTGACGCGACGGTGGCTGACCTGGAAGATGACTTCACCAAAGGCCTGGGAAACGATAGCAAGAGCGACGGTGACTCGTCCACTGTGGATGTTGAGTCGAGTCCTGTGGCCAAGACGGAAGTTGGGACTAGCGAGAGTAAGCAAACAGCGGCGGAGGCGGAGGGGAAGCCCAAGCTCAAGTGCAACCACTGCGACAAAATGTTTAGCAGTCGGCAGAGCAAGTCTATGCACACTAAGGCGTTGCACGCGGGCGAGCGGCCGTACGTTTGCCGCGAGTGCGGCGCCGCCTTcccgtacccgcgctcgctcgccatacacgccatcagccaccgacggaccaaccccagcaaggggttcgcctgcgacctgtgcgggaagGTCCTGAACCATCCGTCGTCCGTAGTGTACCACAAAGAGGCTGAGCACGCTGGGAAGCAGTATGTGTGTCTCAAGTGCGGGAAGGGCTTCAAGCACAAGCAGATATTGCAGCGACACCAGCTGGTACATTCGCAGCTGCGGCCCTACACCTGCCAGACATGCAGCGCCTCGTTCAAGACCAAGCCAAACTTGATAAACCACCAGCTGCTTCACACCGGCATCAAAAAGTTCAGCTGCGAAACCTGCAAGCAGAGATTTGCACATAAAACCAGCTTGACGCTCCATATGAGATTACACACGGGTCTCAAGCCCTACACGTGCGGCGTGTGCACAAAGAGCTTCTCCCAAAAGGGCAACCTGTCGGAGCACGAGCGAATCCACACGGGCGAGAAGCCATACAAGTGTACCCTGTGCCCGCGAAGCTTCACAACCAGCTCGCAGCACCGCCTGCATTTGCGGCGACACTCCGCGGAGAGACCCTACGACTGCACGCATTGCGGGAGAAAGTTCCTGTCGCGCGAGTCGTGGCGCGTGCACATGCGTCGCGAGGCGGGCGCGCGCGCGCACCGCTGCCCCCTGTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCTCAAGCACCAGCGCCGCCACACCGGCGAGCGGCCCTTCCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGCAAGTCCACAATCAGACCTCGCTGCTGGCCCCCGAGAACCAGCGGCAAGTCATCGAGCCAGCCGGCCAGATCATCATCCAACCCCAGCCCACCCCACAGCTGATCATCCAAGCCGAACCAAGCGACCTGGTCTTGGAAGACAGCGAACAGATCGTCCTTCAAGAAGCCGAGGGGAGTCTTCCCACCTCACCGGCAGATGGGGAACAGGTCATTTATGTGACTTACAATGTGGAGGGTGACGAATCCGGATTCCAGATACTGGATGCGGGCAATGAAGAGGAGGTGATGTCCCCGGAGGCGGCGCCGAGTCCGTTGAGGTCGGGCCGCTCGCTGCTACTGCCTGGAGTGGACGTCCCCGCGCCGCGCCGCCGCGACCCCGCTGGGGACCAGAACGCTCACATGGCGGTGACGGACGAGGAGGGCAATCCTCTGCACTTCACTATGCAGGACGGGACGCGGCTCGCGATCACGTCCGCCGACGGGAAGTCCTTGCAGGTGGTAACGCAAGACGGGCGCACCATTCCCGTTGAGATCAACGGCTACGACGACGAAGATGCCATGGAAGCGGAGAGCGAAGACACGTCGGAGCAGCAACTGACGCTGCACAAGGCCGAGGATTTTAGTCCCGAAGCGACGCCCGTCGCGCATTACTTCACCATCGTCTAG
- Protein Sequence
- MDVLLYNSAVCRLCGEENENGTFLYADSENEENFCNLINTYLPLKVSDDGQLPRTICPGCTIQVEATVEFLKLIIKGQKIIRELHSDEKTYSKSLVQKLDTSETDHPEKLYYEISTSNGAYQLEHPMSLQAAGLDKPKRKRGRPPKKPKTPEELAAEAAEREKELARIQASREANDTKEPTGKRRRKTPTRFREAVQGKELERILKDEGVIGPEEVDPDGKPDEPGSCPPVVKLPEVIGHLETSGEPVVVLQGKGRGRPKGRMRPTREQCAICGMEFSCVGRYMSHIAQHGPVLYQCGECGMEASTRLLFTQHQSDTGHTGQKVIRLKNEKRILPPEPDPLDMVETTILPDLNPASLNLMPIGTKVDIDATVADLEDDFTKGLGNDSKSDGDSSTVDVESSPVAKTEVGTSESKQTAAEAEGKPKLKCNHCDKMFSSRQSKSMHTKALHAGERPYVCRECGAAFPYPRSLAIHAISHRRTNPSKGFACDLCGKVLNHPSSVVYHKEAEHAGKQYVCLKCGKGFKHKQILQRHQLVHSQLRPYTCQTCSASFKTKPNLINHQLLHTGIKKFSCETCKQRFAHKTSLTLHMRLHTGLKPYTCGVCTKSFSQKGNLSEHERIHTGEKPYKCTLCPRSFTTSSQHRLHLRRHSAERPYDCTHCGRKFLSRESWRVHMRREAGARAHRCPLCPRAFAERWALLKHQRRHTGERPFRCPHCPRAFADCSNLNKHKKQVHNQTSLLAPENQRQVIEPAGQIIIQPQPTPQLIIQAEPSDLVLEDSEQIVLQEAEGSLPTSPADGEQVIYVTYNVEGDESGFQILDAGNEEEVMSPEAAPSPLRSGRSLLLPGVDVPAPRRRDPAGDQNAHMAVTDEEGNPLHFTMQDGTRLAITSADGKSLQVVTQDGRTIPVEINGYDDEDAMEAESEDTSEQQLTLHKAEDFSPEATPVAHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -