Yplu002534.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371219.1:9146314-9150629[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.024 2.2 9.7 1.2 2 19 48 65 47 70 0.95 2 25 8e-05 0.0075 17.5 0.5 3 23 139 159 137 159 0.95 3 25 0.00017 0.016 16.4 1.6 2 23 164 186 163 186 0.92 4 25 0.044 4.1 8.9 0.4 1 21 190 210 190 211 0.96 5 25 3 2.7e+02 3.1 0.6 3 23 220 241 218 241 0.92 6 25 0.14 13 7.4 1.2 1 21 248 268 248 271 0.81 7 25 4.5e-05 0.0042 18.3 1.4 2 23 276 297 275 297 0.96 8 25 0.00014 0.013 16.8 2.8 1 23 303 325 303 325 0.99 9 25 0.026 2.4 9.6 0.1 2 23 363 385 362 385 0.93 10 25 0.044 4.1 8.9 0.7 2 23 453 474 452 474 0.96 11 25 0.04 3.7 9.0 1.3 2 23 479 501 478 501 0.92 12 25 0.055 5.1 8.6 0.8 1 21 505 525 505 526 0.96 13 25 2.4 2.3e+02 3.4 0.2 3 23 535 556 533 556 0.92 14 25 0.42 39 5.8 1.4 1 21 563 583 563 586 0.81 15 25 0.00033 0.031 15.6 1.5 2 23 591 612 590 612 0.96 16 25 0.00015 0.014 16.6 2.4 1 23 618 640 618 640 0.98 17 25 0.091 8.4 7.9 1.0 2 23 647 668 646 669 0.94 18 25 0.0026 0.24 12.8 0.6 1 20 768 787 768 790 0.91 19 25 2e-05 0.0018 19.4 3.2 1 23 794 817 794 817 0.95 20 25 0.067 6.2 8.3 0.4 3 21 823 841 822 842 0.94 21 25 0.15 14 7.2 0.3 1 23 849 872 849 872 0.84 22 25 0.27 25 6.4 2.4 1 23 879 902 879 902 0.85 23 25 0.0066 0.62 11.5 0.9 2 23 907 928 906 928 0.93 24 25 0.0046 0.43 12.0 1.7 1 23 934 956 934 956 0.98 25 25 0.27 25 6.4 1.1 3 23 964 984 964 985 0.96
Sequence Information
- Coding Sequence
- ATGGACCGTCACTCTCAAAAAAAAACAACCACCAAAAGCCTTGCTCAAGATGTCGGATTGGGCAAGATGCGAGACAGTGCGAGATTGATATTGAAACACTCCACCGCATATCCGTTCAAGTTGGCCAAGAACGAGCACATCCAGTGTTATTTCTGTCCCAAGAATTTTGAGGACCCTGTTGAGTTCAGAAGACACTTTGACTGCTTACACTGCGGTGTCGATAGGTCTAGTGTATTTAGTGACAACATGTCTACTCGTATAGACATCACTAACCTGCTTTGCAGGCTTTGCGCGACGTTACATGATTCGTTACCTTCCTTGGCAGAACATCTACAATCACAGCACAGCATCTCTGTCGATCCGACCATCAAAGTGAATCTTCTCCCCTTAAAAATGGAGAAAGACGCTACAATTTGTGCCACTTGTGGCACGACCTTCACATCTCAAAAGGAACTCTCAAAGCATTTGTACGTCCATTCTCTCGGACTGATATGCCACATTTGCGGCAAAAAGTTTCAAACCAAAAGGGGTCTGCAGGGGCACATGACAGAGAAGCATTCTACTACTTTCACCTGTAGGCAGTGTAGACGCCAGTTCGCTACCAAACCAGAGAGGATCCAGCATATACGCGAGAACAAATCGTGCTGGCCGTACGGTTGTGCGACGTGCAAAGAGCGATTTCACTTTTGGGAAGCGAGACAATCGCATTTAGAGCTGGTACACGGCGAGAAGAAAATCACGTTCCCGTGCAAAGAGTGCGGCTTAGTGTTTGAAAAGAGAATACAATTGTATTTCCATTTCAAACAGACGCATACGCAGGACTTGAAGTGCCACATTTGCGGTTTAACTTTTTCCCAGAAGCGCGATTTGCTCGAGCATGGCTACACGCATACTGGCGAGAGGCCGTACAAATGCAGTCATTGCGATGCCTCCTTTGCAAAGTCTAAGACATACGCGACACATATAAAAAGCCACGATGACAGCTTTGCCCAGGATGTCGGATTTAACAAGATGCGGGACAGTGCGAGATTGATATTGAAACACTCCACCGCATATCCGTTCAAGGTCACCAAGAACGAGAAAATCCAGTGTTATTTTTGTCCCAACGAGTTCGCAGACCCTGTCGAGTTTCGAAAACATATAGATCAGTTACATTGCGGTGTTGATAGATCTAAAGCGTTTCACGATACTATGTCTACACGTATTGACATCACTAACCTAATTTGTAGGCTATGCGTGACGTTGCATGATACGCTGGGATCCCTAGCGGAGCATCTTAGGACACAGCACGATCTTGACGTTGATCTGACTATTAAATCGAATTTACTGCCCTTAAAACTGAAGAAAGACTCGGTGGTCTGTGGAACTTGTGGTAGCACTTTTTCCGGCCACAAGGAGATGTCGAAGCATTTGTATGTACATTCCTTAGGACTAATATGTCACATCTGCGGCAAGAAAGTGCTAACTAAAAGAGGTTTGCATGCTCATATGGCGGAAAAGCATTCTTCTACGTTTTCTTGTAGGCAGTGTAGGCGGCAGTTTGTTACTAAACAGGAAAGAATCCAGCACATACGTGAGAACAAGTGCTGCTGGCCTTATGGTTGTGCGACGTGCAAGGAACGATTTCAATTTTGGGAGGCGAGACAATCACACTTGGAGCAAATCCATGGCGCAGACAAAATCACGTTTCCGTGCAAAGAATGCGGTAATGTCTTCGAAAAGAGAATACAACTGTACTTCCATTTCAAACAGACCCATACGCAGGACTTGAAGTGTCACGTTTGCGGATTAACCTTTTATCAAAAGCGGGATTTGCTCGAGCATGGCTACACACACACTGGCGAGAGGCCGTATAAGTGTAAGCATTGCGACGCCTCATTTGCGAAGGCAAAGAACTTCGCTAACCATTCAAAAATCCACGACGACAGCAAGAAATTGAGCTGTCCTGTGTGCACTAAGCTGTTCGTTGAGAGGGCTAAAATAAAAATGCATGTCAACAAGCATCACCCGGAAATATTTGAAGATTGGGCACTCTCTATGAATTTTAGAACCCTCTTTGAAGATCCGGTCACGTTCAGAATGCACGTCAACTGTCAACACAGGAGCCTCGATAGGTCAATTGTGCTAAAAAACAAGCGCATGATCATACGCGTTGATATCACTCATCTTGCGTGCAAGCTGTGTATGACACCGCACGATACATTACCTTCTCTGGCCGACCATTTGAAAGTACAACATCAGCTTGACGTCGATGCTAATGCAAACTTCAGACTAGTTCCTTTAAGATTAGAGTTAGACCGCTTTGTTTGCGTGACCTGCGGGAAAAAGTTCACCGGTTACAAAGAACTGTCGAAACACTCTGGTGCACATTTCCTTCGATTCATTTGCCACATTTGTGGTAAAAATTTCCAAACCTGCAGCGGTTTGAAAAGACATTTAATTATTAATCATTCGGCGGGCCCCATGTGCAGAGTTTGTAGACGTACATTTCCGACGAAGGAGGCGAGGAAACAACACGTGCGCGAGAGCAAATCGTGCATGACTTTCCTCTGTAAGGAATGCAATGAGAGGTTTCCTTCATGGGAAGTGAAAGATAAGCATATGGTCGAGAAGCACGGGCAGGCTAAACTGACTTACCCATGTAAGGAGTGTGGTTTGGTATTCGATAAAAGATGTGCCCGTTACCAACACTTCAAAGCGACGCACACTCAGGATTTAAAATGCGAACTTTGCGATAAGACTTTTTCAATGCGACAACGGCTGATCGAACATGGTTTCAAGCACACTGGCGAGAGACCCTACAAATGCAATATTTGCGAAGCGTCCTTCGCTACGTTGAAAAACCACAGGCAACATGTGAAAATACACGACGATAGTAAGAAATTGGGCTGCCCGGTGTGCGCCAAACTGTTCGTGGATAGAACGAAGATAAAGTTGCACGTCAATAAGCATCATCCCGATGTATTTGAGCAATGGGCTCTCACCATGAAGTTTAGGACTAATTAA
- Protein Sequence
- MDRHSQKKTTTKSLAQDVGLGKMRDSARLILKHSTAYPFKLAKNEHIQCYFCPKNFEDPVEFRRHFDCLHCGVDRSSVFSDNMSTRIDITNLLCRLCATLHDSLPSLAEHLQSQHSISVDPTIKVNLLPLKMEKDATICATCGTTFTSQKELSKHLYVHSLGLICHICGKKFQTKRGLQGHMTEKHSTTFTCRQCRRQFATKPERIQHIRENKSCWPYGCATCKERFHFWEARQSHLELVHGEKKITFPCKECGLVFEKRIQLYFHFKQTHTQDLKCHICGLTFSQKRDLLEHGYTHTGERPYKCSHCDASFAKSKTYATHIKSHDDSFAQDVGFNKMRDSARLILKHSTAYPFKVTKNEKIQCYFCPNEFADPVEFRKHIDQLHCGVDRSKAFHDTMSTRIDITNLICRLCVTLHDTLGSLAEHLRTQHDLDVDLTIKSNLLPLKLKKDSVVCGTCGSTFSGHKEMSKHLYVHSLGLICHICGKKVLTKRGLHAHMAEKHSSTFSCRQCRRQFVTKQERIQHIRENKCCWPYGCATCKERFQFWEARQSHLEQIHGADKITFPCKECGNVFEKRIQLYFHFKQTHTQDLKCHVCGLTFYQKRDLLEHGYTHTGERPYKCKHCDASFAKAKNFANHSKIHDDSKKLSCPVCTKLFVERAKIKMHVNKHHPEIFEDWALSMNFRTLFEDPVTFRMHVNCQHRSLDRSIVLKNKRMIIRVDITHLACKLCMTPHDTLPSLADHLKVQHQLDVDANANFRLVPLRLELDRFVCVTCGKKFTGYKELSKHSGAHFLRFICHICGKNFQTCSGLKRHLIINHSAGPMCRVCRRTFPTKEARKQHVRESKSCMTFLCKECNERFPSWEVKDKHMVEKHGQAKLTYPCKECGLVFDKRCARYQHFKATHTQDLKCELCDKTFSMRQRLIEHGFKHTGERPYKCNICEASFATLKNHRQHVKIHDDSKKLGCPVCAKLFVDRTKIKLHVNKHHPDVFEQWALTMKFRTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -