Yplu018845.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371211.1:589716-591709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.062 5.8 8.4 1.2 1 23 161 183 161 183 0.95 2 13 1.6e-05 0.0015 19.7 2.4 2 23 190 212 189 212 0.92 3 13 5.8e-06 0.00054 21.1 5.2 1 23 218 240 218 240 0.97 4 13 1.8e-06 0.00017 22.7 0.9 1 23 246 268 246 268 0.98 5 13 2.4e-05 0.0022 19.2 0.3 1 23 274 296 274 296 0.98 6 13 1.4e-05 0.0013 19.9 0.5 1 23 302 324 302 324 0.91 7 13 0.039 3.7 9.0 6.9 1 23 330 353 330 353 0.92 8 13 0.028 2.6 9.5 2.2 3 23 424 443 422 443 0.96 9 13 1.9e-05 0.0017 19.5 2.1 1 23 449 472 449 472 0.98 10 13 2.4e-05 0.0022 19.2 6.8 1 23 478 500 478 500 0.96 11 13 2.6e-06 0.00024 22.2 1.0 1 23 506 528 506 528 0.98 12 13 1.4e-05 0.0013 19.9 0.1 1 23 535 557 535 557 0.97 13 13 0.036 3.3 9.2 0.1 6 21 567 582 566 583 0.93
Sequence Information
- Coding Sequence
- ATGAGAGCAGTTGTTTGTTGCAGGTGGGATGCCTGCTGGGGTTTTGAGAAATACCTCGCGGAGCGCAGGGCAACCGACAATCTGCAAAAAGCAACGAGAAGCTCGGTGCTGGAATCTATTACAGACGACGTCGCATTTGATAGAAAGGAGGACACTGATACAGACCTAGAGGACGATCAGCCGCTTTCCAGCATCGTGGCTGGTAAAGTAAAGACCGTTGCTTATAAGAAGTTTTACGATGCCTTGCTAAAATTTAGGGACCATTACGTCACTAAACATGAAACAGAAACTTGTGCCTACCCTGATTTTACTGAATCAAGCGATTCCGAGACCATAGAAAGTGTAACCATCGATGGTGAAACTTCTGGACTGGACAGATTTGACGATTTGACTACTAAAAATATGCGGTGTGAGCGGATGGACGAAGAGACGAGAAAGGAGATTAGCGAAGCTCAGACCAAGATAAATGGAAAATTGTATTTTGTGTGCAGCATTTGCGGCAAGCGCCTCGGCTCCCGCCAGACTTATGTGTTTCATAAACGGACGCATACAGGAGAAAGGCCCTGCGTGTGCCACTTATGCGGCAAACGTTTTACGGTACCCAGTGGCTTACAGCGGCATCTTACAGAAACGCATGAGCGCGCGAAAAGGCACTCTTGCCATTTATGCAGTAAAAACTTCGCGAACTCACAAAATCTAAAACAGCACATGCGCATTCACACGGGAGAGAAGCCATTCGTTTGCGCGCAGTGCGGCAAGCGCTTCGCCCAGAGCGGCTCCTTGCACGTCCACTTGAAAACCCACACGGAAGTGTTCCCTTTCCAATGTGCAGAATGTGGAGCGAAGTTCCGAGTGAGATCAGGCTTGGCGAGGCACAGGTTGAAACACACAGGCGAGCGGCCCCACGATTGTCCGGTCTGCGGCAAAGCTTTTAGACAAAGACACGAGTTGTCTGCTCACGAGGCAGCCCACTCCTCCACCGCGCCCTACAGGTGCCCCCACTGCGCCGCTGCCTTCCGACAGAGACGGACCTTGAGGCATCACTGCAAGAAGATGCATGAAAACACCGAAGCCAGGCCCGCGCCGCCGCCGCCGCCGCCTCCGCAACAAATCATATACACACACCTGGCTCAGTATCAGGAAACCAATGATCATGTTTTGGTTATCGATAAGATGAATGAAGAGCGCGCCAATCCGGGCACGACGGAACGAGCCACAGAGACCGAACAGCTTTTGGAAGTTACCGTCGACGAGAAGAAATACGTCATCTGCGGAATTTGTCGCAAGTGCGTCAGCGCGCACTCTTGGAAGAGGCACATCCGCTCCCACGTGGACGACAGACGCCACCGCTGCCACTTGTGCGGGCTCGGGTTCAACGAGAGCGGGAACCTGGCGCGACACGTGCGGACCAAACACCAGAAAGAAAGACCGCACGTGTGTTCACAGTGTCACAAGACTTTCAGCCGACTTGACCACCTCAAAGACCACATGTCTCTGCATTCTGACGCCAGAGAATTCACCTGTGATACCTGTGGCCAATCATTTAAGTCGAGAAGCGCGCTGCGCATGCACGGAAAGATGCATGACAGTAACACCAGCAAATTTTCCTGTCTGGAGTGCGGAGCCCGGTTCAAACGGAGCGGCGAGTTGAGGGCGCACGTCTCTGTTCACACTGGGGAGAAGCCCTTCGTATGTGCGTGTGGGAAAGCCTTCCGTTTGCGCGCGCAGCTCACCGCGCATCACATTACGAGCGCCAAGAGACAAGCTGTCATGGACACTGTAAGCTGA
- Protein Sequence
- MRAVVCCRWDACWGFEKYLAERRATDNLQKATRSSVLESITDDVAFDRKEDTDTDLEDDQPLSSIVAGKVKTVAYKKFYDALLKFRDHYVTKHETETCAYPDFTESSDSETIESVTIDGETSGLDRFDDLTTKNMRCERMDEETRKEISEAQTKINGKLYFVCSICGKRLGSRQTYVFHKRTHTGERPCVCHLCGKRFTVPSGLQRHLTETHERAKRHSCHLCSKNFANSQNLKQHMRIHTGEKPFVCAQCGKRFAQSGSLHVHLKTHTEVFPFQCAECGAKFRVRSGLARHRLKHTGERPHDCPVCGKAFRQRHELSAHEAAHSSTAPYRCPHCAAAFRQRRTLRHHCKKMHENTEARPAPPPPPPPQQIIYTHLAQYQETNDHVLVIDKMNEERANPGTTERATETEQLLEVTVDEKKYVICGICRKCVSAHSWKRHIRSHVDDRRHRCHLCGLGFNESGNLARHVRTKHQKERPHVCSQCHKTFSRLDHLKDHMSLHSDAREFTCDTCGQSFKSRSALRMHGKMHDSNTSKFSCLECGARFKRSGELRAHVSVHTGEKPFVCACGKAFRLRAQLTAHHITSAKRQAVMDTVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -