Yplu002535.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Yponomeuta plumbellus
Gene Symbol
-
Assembly
GCA_947310845.1
Location
OX371219.1:9151787-9172082[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 38 0.083 7.7 8.0 0.6 3 21 2 20 1 21 0.94
2 38 0.19 17 6.9 1.7 1 23 28 51 28 51 0.93
3 38 9.1 8.4e+02 1.6 1.4 2 20 109 127 108 131 0.92
4 38 0.0039 0.36 12.2 0.5 1 23 199 221 199 221 0.92
5 38 8.7e-05 0.008 17.4 0.5 1 23 225 248 225 248 0.94
6 38 0.048 4.4 8.8 0.6 1 21 252 272 252 273 0.95
7 38 1.4 1.3e+02 4.2 0.4 1 23 280 303 280 303 0.88
8 38 0.047 4.3 8.8 2.2 1 23 310 333 310 333 0.91
9 38 4.7e-05 0.0043 18.2 1.1 2 23 338 359 337 359 0.94
10 38 0.0042 0.39 12.1 2.5 1 23 365 387 365 387 0.98
11 38 0.025 2.3 9.7 2.1 2 23 429 451 428 451 0.97
12 38 0.072 6.7 8.2 0.6 2 23 477 499 476 499 0.90
13 38 0.041 3.8 9.0 1.2 3 23 523 543 521 543 0.96
14 38 9.1e-06 0.00085 20.5 0.8 1 23 547 570 547 570 0.94
15 38 0.2 19 6.8 2.0 2 21 576 595 575 596 0.93
16 38 0.0057 0.52 11.7 1.0 1 23 603 626 603 626 0.93
17 38 0.24 23 6.5 0.9 1 13 633 645 633 647 0.91
18 38 4.3 4e+02 2.6 0.3 5 23 674 693 670 693 0.84
19 38 0.76 70 5.0 0.3 2 23 719 741 718 741 0.93
20 38 0.029 2.7 9.5 0.8 1 23 789 812 789 812 0.96
21 38 1 93 4.6 0.0 1 19 817 835 817 838 0.81
22 38 3.1 2.9e+02 3.1 2.0 1 13 845 857 845 863 0.82
23 38 0.054 5 8.6 0.2 1 23 875 898 875 898 0.93
24 38 0.00052 0.048 15.0 0.5 2 20 905 923 905 926 0.92
25 38 0.003 0.28 12.6 0.9 1 19 932 950 932 954 0.94
26 38 0.035 3.3 9.2 3.3 1 23 960 983 960 983 0.95
27 38 0.017 1.5 10.2 0.4 3 23 1050 1071 1049 1071 0.97
28 38 0.0017 0.16 13.3 0.5 1 23 1167 1190 1167 1190 0.96
29 38 0.35 33 6.0 0.6 2 23 1235 1257 1234 1257 0.93
30 38 2.4 2.3e+02 3.4 1.0 3 23 1310 1331 1308 1331 0.87
31 38 0.022 2.1 9.8 0.2 2 23 1357 1379 1356 1379 0.91
32 38 4e-06 0.00037 21.6 1.5 2 23 1428 1450 1427 1450 0.96
33 38 0.74 69 5.0 0.2 1 21 1455 1475 1455 1476 0.92
34 38 1.1 1e+02 4.5 0.6 1 23 1483 1506 1483 1506 0.93
35 38 0.00015 0.014 16.6 0.1 1 23 1513 1536 1513 1536 0.97
36 38 0.036 3.4 9.2 0.4 1 23 1541 1563 1541 1563 0.97
37 38 0.00068 0.063 14.6 0.5 1 20 1569 1588 1569 1591 0.94
38 38 0.011 1 10.8 2.1 1 23 1597 1619 1597 1620 0.92

Sequence Information

Coding Sequence
ATGTGCCGAGTTTGCCGAAAAACGTTCCCGTCTAAAGAGGCGAAGATGAAACATACACGCGAGAGCATGCCCTGCATGACATTCGCCTGTAAAGTGTGCAAATTGAGATTCCCTTATTGGGAACTTAGAGATAAGCATATGCACGAGAAGCATGGGGAACTCGCCTCAGCCGCCTGCGTTGGACAGTGCATGGGAAAGTTCGGAAGCTTCACTTGGATCAGTCGGCCGCGGCCGCACGCGTTGGACAGTGCGTGGAAAAGTTCGAAATTGATTCTAAAGCACTCAACAGCGTGTCCGTTCAGGCTGGTCGGGACTAAAGATATCAAGTGCTATTTCTGTGCCAGCTCCTTTGAAGACCCGGTACAATTCAGAATGCACGTCAACTGCCAACACAGTACCATCGATCGGTCCATTGTCTTGCGAAACGAACGCATGATCGTACGTGTCGACATCACCCACCTTCTGTGTCGGCTGTGCATGACCCCGCATGACTCTTTAGAATTGCTAGTGGAGCATTTTAAATCACAGCACGAACTCGATATTGACACGAACGTCAACTTGAGGCTCGTTCCTTTAAAGTTAGAGAAGGACAGATTCGCTTGCGTCACGTGCGGTAAAAAGTTCACAGGCTACAAAGAGTTGTCGAGGCATTCAGGCGTGCATTTCCTTAGATTCATATGCCATATTTGCGGCAAAAACTTTCAAACGCCAAACGGTTTGAAAGAGCACTTAATACTAAGTCACTCTGCGGGGCACGTGTGCAGACTATGTAAACTTACTTTCCCTACTAAGGAGGCGAAAAGGCAGCACATTCGTGAAAACCAAGCGTGCATGACTTTCCTCTGCAAGGCGTGCAATGAACGATTCCCCTTCTGGGACTTAAGAGACAAACATATGGTTGAGAAGCATGGGCAAGCCAAATCGACCTACCCTTGCAAAGAGTGTGGGATGGTCTTCGAGAAACGACATAACCGTTACCTTCATTTCAAAGCGACACATACTCAGGATTTGAAATGCCAGATCTGCGACAAGACGTTCTCTCAAAAACAACAGTTGATAGAACACGGTTTCAAGCACACTGGCGAGAGACCTTACAAATGTAACTATTGCGACGCGTCGTTTGCGTCACTAAAGAATCACAGGCAGCATGTCAAAATACATGATGTTACTAAGAAACTAAGCTGCCCTGTATGTGACGACACGTTAGTGACCACACGACGGAACGCTGCGATTATCTTGACCAACACCACGGCTTACCCCTTCAGGCTCCCTGATAGCGAGATGCAGTGCGTCTACTGCTGTACTAGTTTCGAAAACCCACTAGATTTTCGCACACACATGCGCACCGACCACCCCTCCTATAACATGGAGACAGCTTTCGCACATTGCAAATACGAGAGCTACGTAAAAGCCGACTGCACTGAGCTCCGGTGTAAAATATGCACTAAAATGTTCGATAAATTAGAAGAGATTGCTATACATTTGCACGAATCTCACGATAAGAAAATTAACTTGAACTTCGAACTAGGAATCCTTCCATTCCGGCTCGAGAACGACAAGATGGATTGCTACTTTTGCTCGAAAAATTTCTCCGGTATACGTCAATTGAGTAGGCACTTGTCGTCGCATTATATGAAGTTCACATGCGAGTTATGTGGCAAATCTTACATTTCCAAAACATCTCTTAGGCAGCACATGCTGTTCGGACACAGGGGCGATACGTGCATTTGCAGAAAATGCAAAGAGCGTTTCCAATCTACTGATGCGTACAAGCAACATATGAACGAGTCCACTGCCTGCTGGATGCACGTATGCAACATATGTGGAGAGCGATTCAAAGGCTGGCATCTTAAAGAAACTCATCTCATGGACGTTCACGGACGCCCCAGCAAAACGTACCGGTGTAGGGAATGCGACAAAGTCTACAGCAAACAGTATGTGAACGCCAACGCGCAACTGATAGTGAAAAATACCACGGTCTATCCGTTCCAACTGCGTGGTAACAGCATTAAGTGCATATTCTGCAGCGGCCAGTACGAGGATCTCTCGGAGTTCCGGGCGCACATGAAAGACCGTCACGAGCCATTCAATCTCTATACGGCATTCAGTCATGTGTCCAAAAATAACTACATAAAGCTCGATTGCACGGAAGTTTCCTGCAGAATATGCGCAAAAGAGATCGAGCACCCGAGCGATATAAAGAAACATCTTCAGGATGATCACGCAATAAAATTCATAGAAGAGGCGGGTTTGCATTGGTTTCCGTACAGATTTGTCAATTCACAGCTGATTTGCGGAATATGCGGAGAGAACAAACCCGGTCTCAAACAGTTGAGCACTCATTTAACTGAGCATTACAGTAACTTCGTCTGCCTCATTTGTCAAAAGTCGTATATTTCCGAAACTGCTTTGCGGTGTCATCTGAAGGTCGGCCATCCCTCGGAGAAGTATCCTTGTCCGAAGTGTAAACTGCCTTTTCCAACGTTGCTGGCTCGGCGGGAGCATGTTTTGAATTCAACCGCTTGCTGGCGATATCGCTGCCAATATTGCGAAGAAAGATTTGAATCTTACTGTGCGAAAGAAATTCATTGCGTTGAGAAACATGGCATGTCTAAAAAGACCTATCCTTGTACCGAATGCGCGCAGGTCTTCCCTAGAGCCCAAGTGTATAGGAAGCACTTCATGCTGCTTCACAGCAAGAGCGGTTTCGAAGTCTGCGTCCATTGCGGTAAACGATTCGACAGCAAACGATCCTTAGAGGCTCATTTGCCGGTTCACACCAAGGAGAAACAATTTAAATGTCCCGTTTGTCAAAAGTATTTTGCCAGGCGGAAGAGCTTAGGGCAGCACAAGTGGATACATAGGGAAGAGAAGCGGTACCAGTGTGTGCCCTGCAATCGAAAGTTCACACAGAAAACCTGCTGGAAGATCCATATGAAAGCGCGTCATCCCGATGTCAAGCTTGAACTAATTAATACGCAGACTCCTGTCATCTTTGATTTGCCAAAAGAGGATACAAGGACAGATGTTAACCCTGACAAAGAAAAAAGTACAGCACACAGTAAACTGTTAAACGTGGAGAACGCGCAGTTGATCGTGAAACACACGACGGTTTACCCATTCCAACTGCGGTCAAGCACTATGCTTTGCTTATTCTGCACTGAGAGGTACGTTGACCTCGCAGAGTTCAGAAACCACATGAAAACCGAACACGAACCTTTCAATTTGAAGAGGGCGTTCCGACACGTCTCCAAAACCAATTACATTAAAGTCGACTGCACCGAGTTGTCGTGCAGACTCTGCCCGCTAAAGATAGCAACACCGAATGATATACCGAAACATCTTCAAGAAGAGCACGACATTAAATTCATATCTGATGCTGGTATAGCGTGGTTCCCGTACAGATTTGTCAACGATAAGCTGGTCTGCGGGATCTGTGAAGTTAATAAACCAGGACTGAGGCAGCTTAGTATACACATAGCGACACATTATAAAAACTATACTTGTGACGCGTGCGGAAAATCGTACATGGTGAAATCTTCGCTGCTCTCACATTACAGCATCAGACACGCGGAAGAAAGCTTCACTAACCCCACGGAGCACCGAAAGCACTTCAAAGAAGAACATATCACCTATAACGTGAAAACTATCTTTGATAAAAATAACGCCCACAGTTTAGCTAGAGTTGACTGCACAAATTTGTCTTGCAGACTTTGTTCCCACGAGTTTGATAACCTCGATGATGTAGCGAAACATTTAAAAGATCTCCACAATGTTAAGATAGTCTTGAGTGCAGGATTGGCCCTGTTGCCAAACAAATACGAAGCCGTCTCAGAGTTTAAAAGACAAAAACGGATATCGGAAGCCATAGTGAAATATACCACGGCCTATCCCTTCCGCCTGCCCGGCGGCGGCGATGTGATGGTTTGCGTGTACTGCATGAAAGAGCAGCCGACATGCGACGAATTTCGGAGACACATGCGAGAGGAGCACAGAAAGTTTAAACCACAGTACGCTTTCCTGCATGTGAACTGGCAAGAACACGGCAAAGTCGACATAACAGACATGCGCTGCCGCCTCTGCGGCAAAAAATTCGAAAATCTAGAAACAATAGTTAAACATCTGATCGACGAACATGCCGTAGACCTCGATTTGACAGCTGGCATACCCCTACAACCTTACAGAATTACACAATCGCAAATTATATGCGGCATTTGCCAAGAGGGCTTCTTAGGTTTCCGACAAATGGGTAAACACGTGTCGATTCATTTCAAAAAAGTTACATGTGACATCTGCGGGAAATGCTACAAAAGTAACACGGCCCTGCAACGGCATCTGAAGATATCTCACGCGGGAAATGCCTTCCCGTGCTATAAATGCCTGAAAGGTTTCAATTCAACCGAGGAGCGCCGCGCTCACGTCATGAGTACGAAGAAATGTTGGAGCTACTGTTGCGCGCTGTGTGGAGACCGCTTCATTACTTGGGCGACGAAGCAAATGCATTTAGTTAAAGTACATAACCAACAAAAGAAAACGTATCCCTGTGGGGAATGCAGCGAGGTTTTTACCGACGCACAAAATTATCGGGCGCATTACGCCACGAAACATACAAATTTTAACTTTAAATGCTTCGTGTGTAGCATAAGTTTCGAGTCTGACAAGAAGTTAGCGGATCACGTAGTCACGCATACCAAGGAGAAAAGGTTTTCATGTCCCGTCTGTACTAAGCTCTTCCCGCGGAAGAAAAGTCTGTCGCAACACATGTGGATACATAGAGAAGAGAAGAGGTTTGAGTGTGTTCCGTGCAATAAGAAGTTCAATCAGAAAGTAAGCTGGAGGGGGCATATGAAGTCGCATCATCCGGAACAATGTGTAGAATAG
Protein Sequence
MCRVCRKTFPSKEAKMKHTRESMPCMTFACKVCKLRFPYWELRDKHMHEKHGELASAACVGQCMGKFGSFTWISRPRPHALDSAWKSSKLILKHSTACPFRLVGTKDIKCYFCASSFEDPVQFRMHVNCQHSTIDRSIVLRNERMIVRVDITHLLCRLCMTPHDSLELLVEHFKSQHELDIDTNVNLRLVPLKLEKDRFACVTCGKKFTGYKELSRHSGVHFLRFICHICGKNFQTPNGLKEHLILSHSAGHVCRLCKLTFPTKEAKRQHIRENQACMTFLCKACNERFPFWDLRDKHMVEKHGQAKSTYPCKECGMVFEKRHNRYLHFKATHTQDLKCQICDKTFSQKQQLIEHGFKHTGERPYKCNYCDASFASLKNHRQHVKIHDVTKKLSCPVCDDTLVTTRRNAAIILTNTTAYPFRLPDSEMQCVYCCTSFENPLDFRTHMRTDHPSYNMETAFAHCKYESYVKADCTELRCKICTKMFDKLEEIAIHLHESHDKKINLNFELGILPFRLENDKMDCYFCSKNFSGIRQLSRHLSSHYMKFTCELCGKSYISKTSLRQHMLFGHRGDTCICRKCKERFQSTDAYKQHMNESTACWMHVCNICGERFKGWHLKETHLMDVHGRPSKTYRCRECDKVYSKQYVNANAQLIVKNTTVYPFQLRGNSIKCIFCSGQYEDLSEFRAHMKDRHEPFNLYTAFSHVSKNNYIKLDCTEVSCRICAKEIEHPSDIKKHLQDDHAIKFIEEAGLHWFPYRFVNSQLICGICGENKPGLKQLSTHLTEHYSNFVCLICQKSYISETALRCHLKVGHPSEKYPCPKCKLPFPTLLARREHVLNSTACWRYRCQYCEERFESYCAKEIHCVEKHGMSKKTYPCTECAQVFPRAQVYRKHFMLLHSKSGFEVCVHCGKRFDSKRSLEAHLPVHTKEKQFKCPVCQKYFARRKSLGQHKWIHREEKRYQCVPCNRKFTQKTCWKIHMKARHPDVKLELINTQTPVIFDLPKEDTRTDVNPDKEKSTAHSKLLNVENAQLIVKHTTVYPFQLRSSTMLCLFCTERYVDLAEFRNHMKTEHEPFNLKRAFRHVSKTNYIKVDCTELSCRLCPLKIATPNDIPKHLQEEHDIKFISDAGIAWFPYRFVNDKLVCGICEVNKPGLRQLSIHIATHYKNYTCDACGKSYMVKSSLLSHYSIRHAEESFTNPTEHRKHFKEEHITYNVKTIFDKNNAHSLARVDCTNLSCRLCSHEFDNLDDVAKHLKDLHNVKIVLSAGLALLPNKYEAVSEFKRQKRISEAIVKYTTAYPFRLPGGGDVMVCVYCMKEQPTCDEFRRHMREEHRKFKPQYAFLHVNWQEHGKVDITDMRCRLCGKKFENLETIVKHLIDEHAVDLDLTAGIPLQPYRITQSQIICGICQEGFLGFRQMGKHVSIHFKKVTCDICGKCYKSNTALQRHLKISHAGNAFPCYKCLKGFNSTEERRAHVMSTKKCWSYCCALCGDRFITWATKQMHLVKVHNQQKKTYPCGECSEVFTDAQNYRAHYATKHTNFNFKCFVCSISFESDKKLADHVVTHTKEKRFSCPVCTKLFPRKKSLSQHMWIHREEKRFECVPCNKKFNQKVSWRGHMKSHHPEQCVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-